XLOC_017515


Basic Information

Item Value
gene id XLOC_017515
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 37495088 ~ 37605125 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034809
AGTGTTCATTGTTCAGATGTGGGAATCACAGGAAGTACTGTTTACTAGGCCCGTTTGTACAGGCACAGTAGGTGTTTGTTCAAGGTTACAACGCGAAATAAAAAAGTAGGGTACAGTCATGTTTTACTTATTGGGCCTGGATAACGAGCAAGATAAGGTTGCATCCCGTTTGGAGGGACGGGGAATATATATAGAATAAATTCTGTTCCACAATAACCTGTTGGGTGACTGTTCCAGACATCTAATGGAGCAGCGGTGGCATTTACAAGAATTCTCTACTGAGGGTGTCAGCCATCATTTCAATCTCAGCTGAGAGCTTGTCAGGTCAAAAGGATCTACCGTGGCAGACTTCCCTCCATTGACACACTTGTTCGGAACCCAAGGGAGAAAGTGTGGAttccaaacaaacaacaaaccattTACACAAAGCAATCCATACACAAGAATTGCTCAATTCCTTGACGCACGTCAAAGAGGGCATTTTCCGAACGCCGCTACAGGGACTCATCTCCGAACTACAGTAAAGCAGACAAATCCGGAGTGTGAAGTATTTGTGAATGGAAAATGCTTTAGCACGCTTGGCAGGGAGGATCGTTCCACTGCTTATCAGACAGACTATTACAATTCTTCCTCTCTGCACAAGCAGACACACAACAGTAGGAGGAGGACGGAAGAAAACAAGGAGGATATGCTCTTTTGACCTGCTTCTCAAGGTCGCTGTTGAAGAGATTCAGCATGGTACATGCTAGGTATATGCATAGTGTTTGAAGAAATCCATGCATCTGTAAACTAGGGCTGGGATACATGTGCCCATGACATTCGCCGGGTGTTCCCCTGCGTTATCGCTGGAGCCTTCCCTCACATAATGAATTATGCCATGCTGATAAAGCAGACAGCTGTGTTGGGGGGGCGAGCGGGGGGTTGCATACACAGAGACAGATGAGACGCATTGTGCAAACaagcattttttaataattcccaGTGCAACTGATGGATGATGTGAGGCATGTGAACTCAGTGGGGAATTTGGTGGGGGTATGTGAGGGGTGTCCCTGACATTCCTCTCTGCACAGACTGCGAGGATGCATTGGTATCTATGGAAGTCAAACAGCTATGTACCATCCATGCCGTAACAACAAGTGTGAGAATAAGCACAGGAGAGAACAATGAAAGTAAAGGACATGCTCAGGAACAAGATTCCTCACCAACGCAAGGCTTTAATCGCAGTGTTAATATTACTGCAACATGCAAGCTGTGCAAAGGAATAGAGCAAGTAGAGACTCTGTCACTGACAGCTTGCTGCATCCCACGGATAAACAGCTAACACACGCTCCTCCGTTCCCTTTCCAGTCCTCACGGTTCACATCATCACCCCCTTcagtttacaaacacacacacggggATATCACCTCTCCGATCAACGCTAGATGCTCTGGTAGAGACACAACACAACAAGCCGGAAAAAAAATGGATTTGTGAACCAACCTGGCTTTTCAAGGTCCTCAGTCAACCACAACATTCCGCCGATCTCAAATTCCCCTTGTCCATTCTAGGAGGTCGGTAATAAAACGACAGCCAGCCCCAGCCGAAACTCCCATCAATCAGAAGGCTCTCGCTGATAGAGCGTATACTAGGAGACCTACTGATGTAAGCTAGTCACCAGAGAAAATACCCAGTCGTGACGCATATCCAGGAACAAAAATAGCTCTGGGGCCCCAAGAGGGATTATACAACAGACTACGCTGAGAGGTACTTTTGCAGTGCCTGCTCTTCTgggctgtttttgtgctttatAAGTTGCAAAAAAAGCTGGACGTGAACACAAATAGATGGAACAAAGTACTTCAGACAAATCACAGACCCCCCGTTTGCACACTCgtttgtgtttgcatgcagcaacaCTTACGTCTTATCAGGCAGCATTTAAATTACAGTCTGGCCTCTGTGTCTTTGACCCGGGAATTGTCCATAGAGCGTGGTGTATAACTTCATGGTATCACCACTCACCCCTCCCTCTGCCACCTCCCGCAGGGCTATAAATAGCTCACCAGGCTATTTCTTACAAAATCCCTTTATAGATGTGCTTTCACCGATCACTCTCGGCCAGGCCCAGACACTGATATGATTATCGTTTAGATCGCGGCATGTACTTGTGCATCTGTGCTAGCGCGCATGCATTAAGCAAAGGGTTATCAGACAAGAACAGAACAAATGGTGACATTGCACAGGTGTGCAGTGTGACAATCCTGAAGATTTTGCAGAGGAACCGGCTGCAGAGCGGCCACCCCTTTCACCGCAGGGAACATTAATTCAAACTTATGCTAATATATTTACCTCCGCCACACTGTGTCATAAGTGACAGCAATGCAGCCCTTTTGAGGGTCACCTGAATGAGCTGTCAGCTAAAGAGTTATGACCACATTGGCCCACAGCTGTGGCGCTGTTCCAGCGGGCTTTTACTCAACCTGCAAGATGACATCAAGCTGTCAGGAGTCACCATGATAACGACCATCCCGGTTATCCCAAAGATGAATCAGTTAATCACATCTGCGAGCTAAACATGCCCAGCTATCCAGCAGACTTTTGCCCTTACCACAGAATCCAATTTACGCAGCTAAATATATTTGACCAGGTCTGACCTCTAGAGAGCATCTCTGTGACTAAACGACAATCGGGCCTACCGGGAGCCAGGATCCCTTGTGACATTGCCCACTCAGAAATAcagggaagtaaaaaaaaaaaaacactaaaaagcaCTAAAAACAATTCCCTGGGGGTTCTCACTCACTGTCTGAACAAGTCCTTCTGTAAACATCTCTGCTGGTTTAGTTAACGAtaataaaatgtgttgaattgtTTTTGATAGACTCTGATTTGCTTTGTATTATTCAGTGCCACTGTTGGTCAATTAAATGGGATAattcatgcaaaaatgaaaatgaccttattattaaaggtgcagtatgtaagtttgccacccagtggttgaactaggtattgcatacctggatcaaaacaaacacaaatgcaga
>TCONS_00036639
TTCAGATGTGGGAATCACAGGAAGTACTGTTTACTAGGCCCGTTTGTACAGGCACAGTAGGTGTTTGTTCAAGGTTACAACGCGAAATAAAAAAGTAGGGTACAGTCATGTTTTACTTATTGGGCCTGGATAACGAGCAAGATAAGGTTGCATCCCGTTTGGAGGGACGGGGAATATATATAGACATCTAATGGAGCAGCGGTGGCATTTACAAGAATTCTCTACTGAGGGTGTCAGCCATCATTTCAATCTCAGCTGAGAGCTTGTCAGGTCAAAAGGATCTACCGTGGCAGACTTCCCTCCATTGACACACTTGTTCGGAACCCAAGGGAGAAAGTGTGGAttccaaacaaacaacaaaccattTACACAAAGCAATCCATACACAAGAATTGCTCAATTCCTTGACGCACGTCAAAGAGGGCATTTTCCGAACGCCGCTACAGGGACTCATCTCCGAACTACAGTAAAGCAGACAAATCCGGAGTGTGAAGTATTTGTGAATGGAAAATGCTTTAGCACGCTTGGCAGGGAGGATCGTTCCACTGCTTATCAGACAGACTATTACAATTCTTCCTCTCTGCACAAGCAGACACACAACAGTAGGAGGAGGACGGAAGAAAACAAGGAGGATATGCTCTTTTGACCTGCTTCTCAAGGTCGCTGTTGAAGAGATTCAGCATGGTACATGCTAGGTATATGCATAGTGTTTGAAGAAATCCATGCATCTGTAAACTAGGGCTGGGATACATGTGCCCATGACATTCGCCGGGTGTTCCCCTGCGTTATCGCTGGAGCCTTCCCTCACATAATGAATTATGCCATGCTGATAAAGCAGACAGCTGTGTTGGGGGGGCGAGCGGGGGGTTGCATACACAGAGACAGATGAGACGCATTGTGCAAACaagcattttttaataattcccaGTGCAACTGATGGATGATGTGAGGCATGTGAACTCAGTGGGGAATTTGGTGGGGGTATGTGAGGGGTGTCCCTGACATTCCTCTCTGCACAGACTGCGAGGATGCATTGGTATCTATGGAAGTCAAACAGCTATGTACCATCCATGCCGTAACAACAAGTGTGAGAATAAGCACAGGAGAGAACAATGAAAGTAAAGGACATGCTCAGGAACAAGATTCCTCACCAACGCAAGGCTTTAATCGCAGTGTTAATATTACTGCAACATGCAAGCTGTGCAAAGGAATAGAGCAAGTAGAGACTCTGTCACTGACAGCTTGCTGCATCCCACGGATAAACAGCTAACACACGCTCCTCCGTTCCCTTTCCAGTCCTCACGGTTCACATCATCACCCCCTTcagtttacaaacacacacacggggATATCACCTCTCCGATCAACGCTAGATGCTCTGGTAGAGACACAACACAACAAGCCGGAAAAAAAATGGATTTGTGAACCAACCTGGCTTTTCAAGGTCCTCAGTCAACCACAACATTCCGCCGATCTCAAATTCCCCTTGTCCATTCTAGGAGGTCGGTAATAAAACGACAGCCAGCCCCAGCCGAAACTCCCATCAATCAGAAGGCTCTCGCTGATAGAGCGTATACTAGGAGACCTACTGATGTAAGCTAGTCACCAGAGAAAATACCCAGTCGTGACGCATATCCAGGAACAAAAATAGCTCTGGGGCCCCAAGAGGGATTATACAACAGACTACGCTGAGAGGTACTTTTGCAGTGCCTGCTCTTCTgggctgtttttgtgctttatAAGTTGCAAAAAAAGCTGGACGTGAACACAAATAGATGGAACAAAGTACTTCAGACAAATCACAGACCCCCCGTTTGCACACTCgtttgtgtttgcatgcagcaacaCTTACGTCTTATCAGGCAGCATTTAAATTACAGTCTGGCCTCTGTGTCTTTGACCCGGGAATTGTCCATAGAGCGTGGTGTATAACTTCATGGTATCACCACTCACCCCTCCCTCTGCCACCTCCCGCAGGGCTATAAATAGCTCACCAGGCTATTTCTTACAAAATCCCTTTATAGATGTGCTTTCACCGATCACTCTCGGCCAGGCCCAGACACTGATATGATTATCGTTTAGATCGCGGCATGTACTTGTGCATCTGTGCTAGCGCGCATGCATTAAGCAAAGGGTTATCAGACAAGAACAGAACAAATGGTGACATTGCACAGGTGTGCAGTGTGACAATCCTGAAGATTTTGCAGAGGAACCGGCTGCAGAGCGGCCACCCCTTTCACCGCAGGGAACATTAATTCAAACTTATGCTAATATATTTACCTCCGCCACACTGTGTCATAAGTGACAGCAATGCAGCCCTTTTGAGGGTCACCTGAATGAGCTGTCAGCTAAAGAGTTATGACCACATTGGCCCACAGCTGTGGCGCTGTTCCAGCGGGCTTTTACTCAACCTGCAAGATGACATCAAGCTGTCAGGAGTCACCATGATAACGACCATCCCGGTTATCCCAAAGATGAATCAGTTAATCACATCTGCGAGCTAAACATGCCCAGCTATCCAGCAGACTTTTGCCCTTACCACAGAATCCAATTTACGCAGCTAAATATATTTGACCAGGTCTGACCTCTAGAGAGCATCTCTGTGACTAAACGACAATCGGGCCTACCGGGAGCCAGGATCCCTTGTGACATTGCCCACTCAGAAATAcagggaagtaaaaaaaaaaaaacactaaaaagcaCTAAAAACAATTCCCTGGGGGTTCTCACTCACTGTCTGAACAAGTCCTTCTGTAAACATCTCTGCTGGTTTAGTTAACGAtaataaaatgtgttgaattgtTTTTGATAGACTCTGATTTGCTTTGTATTATTCAGTGCCACTGTTGGTCAATTAAATGGGATAattcatgcaaaaatgaaaatgaccttattattaaaggtgcagtatgtaagtttgccacccagtggttgaactaggtattgcatacctggatcaaaacaaacacaaatgcaga
>TCONS_00034808
AGGTGTTTGTTCAAGGTTACAACGCGAAATAAAAAAGTAGGGTACAGTCATGTTTTACTTATTGGGCCTGGATAACGAGCAAGATAAGGTTGCATCCCGTTTGGAGGGACGGGGAATATATATAGAATAAATTCTGTTCCACAATAACCTGTTGGGTGACTGTTCCAGACATCTAATGGAGCAGCGGTGGCATTTACAAGAATTCTCTACTGAGGGTGTCAGCCATCATTTCAATCTCAGCTGAGAGCTTGTCAGAGACGATTATCAAGCTAATTTGTGAGGCAGAAAAACTCAATCCAGTGACGCTGTTGATTCCAACCTCTGTTTCCAGATTGTCTGGAGGGACTGTTATGGTGGAAAATGCAATTGTGTGACAGAGTCAGGTGCTGCGTTATGCATGTGCATACGaaggggagtcagatttgtccagGGAGTCAAATTTTGATACAACTTTCATTCACCTGGGCTCATGTGGTTTGCGCTGTGCACTGGTCACTACAAACTCAATGGAATAGGAGCACATAATTATGTTTcgttaaataagttgcatataaagTTTACGTTTCAAAATTGCCCAAATTTTGTCAACGAGCTAATGCCATTTTTTACAGTACCTGCAAAATCGAATTCAAAACTGCCCAATTGGGTGAGAAACCCCCCAATTTGGCAACACCGGCAGTAAATTGTTAAACATTCCGTTGTCCTCCTTGAATCTCGTGATATAAAAACTGCTGTTActgcatattttacattttg
>TCONS_00036640
GAAATGGAATAGATTAAATTAAGGGGTCATATTGGGAACCTCCATCCAAGTCCTTAGTTAACGTTCACAAATCCAGAAAACCAAGATTTTGGGCTAATCAAATAATGGCAAGCAGAAAAGAATGCAGTGCCCCAAAGCTGGACACGATTACATCCTGTCCCATTGCCAAAACAGAGCAATTGATGAAGCGGGGTCTGTATCGAGTTGTTGTGCACAAGGGTCTGCTGTAATCCCGTGAGTGCAGCGGTGGCAGACTAACATCGCATTACGCTCACGTTCATAGCCGGACAGAGCCCCCACTCCTCTCAGTAATTGCTCTCTTTCACGCTGACAGGTCAAAAGGATCTACCGTGGCAGACTTCCCTCCATTGACACACTTGTTCGGAACCCAAGGGAGAAAGTGTGGAttccaaacaaacaacaaaccattTACACAAAGCAATCCATACACAAGAATTGCTCAATTCCTTGACGCACGTCAAAGAGGGCATTTTCCGAACGCCGCTACAGGGACTCATCTCCGAACTACAGTAAAGCAGACAAATCCGGAGTGTGAAGTATTTGTGAATGGAAAATGCTTTAGCACGCTTGGCAGGGAGGATCGTTCCACTGCTTATCAGACAGACTATTACAATTCTTCCTCTCTGCACAAGCAGACACACAACAGTAGGAGGAGGACGGAAGAAAACAAGGAGGATATGCTCTTTTGACCTGCTTCTCAAGGTCGCTGTTGAAGAGATTCAGCATGGTACATGCTAGGTATATGCATAGTGTTTGAAGAAATCCATGCATCTGTAAACTAGGGCTGGGATACATGTGCCCATGACATTCGCCGGGTGTTCCCCTGCGTTATCGCTGGAGCCTTCCCTCACATAATGAATTATGCCATGCTGATAAAGCAGACAGCTGTGTTGGGGGGGCGAGCGGGGGGTTGCATACACAGAGACAGATGAGACGCATTGTGCAAACaagcattttttaataattcccaGTGCAACTGATGGATGATGTGAGGCATGTGAACTCAGTGGGGAATTTGGTGGGGGTATGTGAGGGGTGTCCCTGACATTCCTCTCTGCACAGACTGCGAGGATGCATTGGTATCTATGGAAGTCAAACAGCTATGTACCATCCATGCCGTAACAACAAGTGTGAGAATAAGCACAGGAGAGAACAATGAAAGTAAAGGACATGCTCAGGAACAAGATTCCTCACCAACGCAAGGCTTTAATCGCAGTGTTAATATTACTGCAACATGCAAGCTGTGCAAAGGAATAGAGCAAGTAGAGACTCTGTCACTGACAGCTTGCTGCATCCCACGGATAAACAGCTAACACACGCTCCTCCGTTCCCTTTCCAGTCCTCACGGTTCACATCATCACCCCCTTcagtttacaaacacacacacggggATATCACCTCTCCGATCAACGCTAGATGCTCTGGTAGAGACACAACACAACAAGCCGGAAAAAAAATGGATTTGTGAACCAACCTGGCTTTTCAAGGTCCTCAGTCAACCACAACATTCCGCCGATCTCAAATTCCCCTTGTCCATTCTAGGAGGTCGGTAATAAAACGACAGCCAGCCCCAGCCGAAACTCCCATCAATCAGAAGGCTCTCGCTGATAGAGCGTATACTAGGAGACCTACTGATGTAAGCTAGTCACCAGAGAAAATACCCAGTCGTGACGCATATCCAGGAACAAAAATAGCTCTGGGGCCCCAAGAGGGATTATACAACAGACTACGCTGAGAGGTACTTTTGCAGTGCCTGCTCTTCTgggctgtttttgtgctttatAAGTTGCAAAAAAAGCTGGACGTGAACACAAATAGATGGAACAAAGTACTTCAGACAAATCACAGACCCCCCGTTTGCACACTCgtttgtgtttgcatgcagcaacaCTTACGTCTTATCAGGCAGCATTTAAATTACAGTCTGGCCTCTGTGTCTTTGACCCGGGAATTGTCCATAGAGCGTGGTGTATAACTTCATGGTATCACCACTCACCCCTCCCTCTGCCACCTCCCGCAGGGCTATAAATAGCTCACCAGGCTATTTCTTACAAAATCCCTTTATAGATGTGCTTTCACCGATCACTCTCGGCCAGGCCCAGACACTGATATGATTATCGTTTAGATCGCGGCATGTACTTGTGCATCTGTGCTAGCGCGCATGCATTAAGCAAAGGGTTATCAGACAAGAACAGAACAAATGGTGACATTGCACAGGTGTGCAGTGTGACAATCCTGAAGATTTTGCAGAGGAACCGGCTGCAGAGCGGCCACCCCTTTCACCGCAGGGAACATTAATTCAAACTTATGCTAATATATTTACCTCCGCCACACTGTGTCATAAGTGACAGCAATGCAGCCCTTTTGAGGGTCACCTGAATGAGCTGTCAGCTAAAGAGTTATGACCACATTGGCCCACAGCTGTGGCGCTGTTCCAGCGGGCTTTTACTCAACCTGCAAGATGACATCAAGCTGTCAGGAGTCACCATGATAACGACCATCCCGGTTATCCCAAAGATGAATCAGTTAATCACATCTGCGAGCTAAACATGCCCAGCTATCCAGCAGACTTTTGCCCTTACCACAGAATCCAATTTACGCAGCTAAATATATTTGACCAGGTCTGACCTCTAGAGAGCATCTCTGTGACTAAACGACAATCGGGCCTACCGGGAGCCAGGATCCCTTGTGACATTGCCCACTCAGAAATAcagggaagtaaaaaaaaaaaaacactaaaaagcaCTAAAAACAATTCCCTGGGGGTTCTCACTCACTGTCTGAACAAGTCCTTCTGTAAACATCTCTGCTGGTTTAGTTAACGAtaataaaatgtgttgaattgtTTTTGATAGACTCTGATTTGCTTTGTATTATTCAGTGCCACTGTTGGTCAATTAAATGGGATAattcatgcaaaaatgaaaatgaccttattattaaaggtgcagtatgtaagtttgccacccagtggttgaactaggtattgcatacctggatcaaaacaaacacaaatgcaga

Function

GO:

id name namespace
GO:0034587 piRNA metabolic process biological_process
GO:1990511 piRNA biosynthetic process biological_process
GO:0035770 ribonucleoprotein granule cellular_component
GO:0071546 pi-body cellular_component
GO:0036464 cytoplasmic ribonucleoprotein granule cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000096774

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034809 False 3032 lncRNA 0.46 3 37495088 37578161
TCONS_00036639 False 2978 lncRNA 0.46 3 37495099 37578161
TCONS_00034808 False 756 lncRNA 0.41 4 37495157 37605125
TCONS_00036640 True 3042 lncRNA 0.46 1 37575120 37578161

Neighbor

gene id symbol gene type direction distance location
XLOC_017514 adgrg6 coding upstream 25448 37383034 ~ 37469640 (+)
XLOC_017513 vta1 coding upstream 115510 37300296 ~ 37379578 (+)
XLOC_017512 cx23 coding upstream 196814 37294112 ~ 37298274 (+)
XLOC_017511 BX855623.1 coding upstream 214306 37256654 ~ 37280782 (+)
XLOC_017510 NA coding upstream 287715 36925790 ~ 37207373 (+)
XLOC_017516 aig1 coding downstream 56104 37661229 ~ 37736703 (+)
XLOC_017517 pex3 coding downstream 155368 37760493 ~ 37769303 (+)
XLOC_017518 atf3 coding downstream 189508 37794633 ~ 37800737 (+)
XLOC_017519 tatdn3 coding downstream 215865 37820990 ~ 37827383 (+)
XLOC_017520 NA coding downstream 231001 37836126 ~ 37842006 (+)
XLOC_017509 NA non-coding upstream 584137 36860737 ~ 36910951 (+)
XLOC_017508 NA non-coding upstream 643792 36845114 ~ 36851296 (+)
XLOC_017505 NA non-coding upstream 698582 36790939 ~ 36796506 (+)
XLOC_017524 NA non-coding downstream 522929 38128054 ~ 38138423 (+)
XLOC_017530 NA non-coding downstream 768547 38373672 ~ 38447247 (+)
XLOC_017534 NA non-coding downstream 985383 38590508 ~ 38598879 (+)
XLOC_017538 BX511178.1 non-coding downstream 1169847 38774972 ~ 38775087 (+)

Expression


Co-expression Network