XLOC_017534


Basic Information

Item Value
gene id XLOC_017534
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 38590508 ~ 38598879 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036644
CTGCTGTGAAAATGGATAGAGGTTTTAAAAAGACATTCAGAAACCATGTGCGTGGTTATTATGCATTACTGCCGTGACCTCAGACTGCAGAGACATGAGAAACGTGTTGCACCACTTGCTGGAATGTCAAAGAGTCATTGCGGCAGTGTGGCGGTGGCACCGAGGTCAGAGATGGAAatcctgtgcaaaaaaaaaaagtgtctggaGGCTAATCTGTTTGATATTTCTTATTGCAGACCACAGCTGGACAGAGCCTGAAGACATGAGCGTATGGACGGAGGACTGACTTCGACAAACCAGAGTGACCCACAACAGTATCCAGGAAAGATAGCAGACTCTGGCTAAGAGTGAGAGCCCACAGATGCAGACTGTGCATGGCCTTCACCGCCTTCAGAGACAGCAACACCTCCTTCACTGAATTAAACTGGATTCCTTTAGGCGCCCCTGAACACAGAACACCGAAACCAGCTGAGCAATTTAATGCTTATtattttctgaatAATGGAGTGATCAACAAAATATAATCACCTctggaaaaaaaactttcatgtCAATATATTTGTTTGTATAACTAATCTTCAGATGCTTgttaatgtatgcaaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036644 True 603 lncRNA 0.43 3 38590508 38598879

Neighbor

gene id symbol gene type direction distance location
XLOC_017533 gtf3c2 coding upstream 6347 38543314 ~ 38584161 (+)
XLOC_017532 znf512 coding upstream 51514 38524827 ~ 38538994 (+)
XLOC_017531 coq8aa coding upstream 71382 38458084 ~ 38519126 (+)
XLOC_017530 NA coding upstream 143261 38373672 ~ 38447247 (+)
XLOC_017529 stum coding upstream 231175 38322444 ~ 38359333 (+)
XLOC_017535 si:ch211-243j20.2 coding downstream 21787 38620666 ~ 38670696 (+)
XLOC_017536 mpv17 coding downstream 73015 38671894 ~ 38716529 (+)
XLOC_017537 uts1 coding downstream 125696 38724575 ~ 38727396 (+)
XLOC_017538 BX511178.1 coding downstream 176093 38774972 ~ 38775087 (+)
XLOC_017539 ift172 coding downstream 238359 38837238 ~ 38900420 (+)
XLOC_017524 NA non-coding upstream 452085 38128054 ~ 38138423 (+)
XLOC_017520 NA non-coding upstream 748502 37836126 ~ 37842006 (+)
XLOC_017515 NA non-coding upstream 985383 37495088 ~ 37605125 (+)
XLOC_017511 BX855623.1 non-coding upstream 1309726 37256654 ~ 37280782 (+)
XLOC_017541 NA non-coding downstream 449180 39048059 ~ 39195117 (+)
XLOC_017544 AL845306.1 non-coding downstream 733090 39331969 ~ 39332092 (+)
XLOC_017552 NA non-coding downstream 1249832 39848711 ~ 39882360 (+)
XLOC_017553 CR847530.2 non-coding downstream 1321564 39920443 ~ 39921106 (+)

Expression


Co-expression Network