XLOC_017520


Basic Information

Item Value
gene id XLOC_017520
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 37836126 ~ 37842006 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036405
ATGGATTTATATCAACCAAGAGGTTTGGATCTTCTATTCTATCTTCAGCTGCTGTGGCGGACCAATAACAAAGAACACTCCAGATCCGGTCcacatcaaacaaatacaaatgagggCAACAAAAGGTTAGGCCATAACCTGAGAGGCCAAAAGCCTCCCATCTTGCATCTCAAAGCAAGAACCCCTGTGAGGCAAATCCCTCACCTCCTGCAGTGAGTCTTCTGAAAAAGTCTTTGATCAGTCATCAGAATAACAATTATCCACAGCTGATCTTATCAATGGATTCAGCATTCTAGGAGGCTATGTGATTTCACAAAACATCTTTCTTCAACAAAGATGtaaatttatatgttaaattAAACAGAGACATGAAAGATCTCATAGTTAAAATCTTCCCAAATTGCTTAATAGCAATGGGACTAAAACCCTGGTTACCTAGAGGCGATAAAGAACTTTACTGCATTGTTCCTGCAAAGACCAATAGCAACAGACTCTATTGTCACGAATCCTGGtggcatttttaaatttgtttttatactataCACATGTTAAACCACATGTCCTGTATGAAAATGGAATTAACTATGTTGAAATTCATGCTTTGATCTCCAAAAGTAGAAAACTCTGCTATCCCCTGTATAGCTGCAGTTTGAACTACAAACAGGAGTATAGAGTGTGATAATTAAATTaaccatgaaaatgcattttttacaggATCCAGCTTTGAACATTGCACCTTAAAATGCTCCGTAAAAGATATTATATGGAATCAATTTGAGCCGGAACACACCTCATGTTCACATTCTTATGCTGGCTCCCTGTTAAACAGGACTAAAATTTTGCAACACAATTATAAAAGTTGATTACCATTGTTCGGAGCATTACACTGACACATAGCCACAGGTAAACCCAGGCACATAGATAACACCTTAGTCTTCAAAGACCCAGGAGTCAAATCTCTTTAGTTAAGATCTTTTGTCCATGTTTATACGAACAAAACACATTAGCCTCACACACATAGAACAGAATAATTAATCTGATGACAGACGAGACAACAAACACCCTCTGACACCCTCTgtcagctgaaaagaaattacACATTTGCATGGCTTTGACAACAAATTGATGGTATAAAACTTCAATAGAGGCGAACTTGCCAATAAATTTAAGATAGATACACTGACTGTTGTGGGGATGGTTGACAAACCAGAGGGCCCCTGGTTTTCCAATCTATCACCAATAACAGGTATAAGTGctaaagtgattaaaattaaacCGAAGTGAGGACACTTCTAATAATCACTAGGacatttaaatttgacaaataccATCAATTGTGTTCAAGCCCCCCCacacgcacataaacacacacacacaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccacacaacatacacacacaaacacacacattattatagatataccttcataattatggttaaataatgtgattactatcatgtatgacaaatatcttcacgttttttcattttgaaaatgaatgtcatttatttgaatgtattgtcatgatgatatgttttatgatgcatactgcctgttatactgttttaataagttgcactgaccttttgatagctttaccttgagtaattcaaaccaagaatatttaatattctccCTATCATTATACCCTATCTCAGTGGTGACAAAGACTTATCTGTTTTTGATTGGACCATTTAAACAGATTGAAAGAGACCTGAGACCAGTTGTACGACTCGCACTTGCTGACTTTTATGctttgatcatatattttatgcTTAACCTCATGACTTTCTCCAATGCAGAATGACACAAGTTCATAACTGTTCAATCGCTGAGCCATCAAGTTGCTGTTTAGGTGTCCGAGAGAAGGCAGTGTATACACACTGTAGACCCCCACATGCCGATGTCTGCATATCTGGAGGTGACCAGATTCATCAGAAGAAGCAGACTATGAGAAGCCCACACGACGTGGACACTTTTGTCAGGGGAAGGACACAGTGGAGGCTATGAAGGCTTGTATGGACTGAATGAACTGTGCATTCGAATCAGGCTCCTCAAAAGAGGTGAAAACGAGCCTGGACCTGTTTAGCTACCTGCTAAACACGACTTACAACTGAAAATGCTGCAGAGACTGTCTTGAATTGCCCCTGAACGACCTCAACAAGGATACATAGTGACCCCATGGACACATTTATATCTGACCCACGGGATCAAATGGGGGTtatctgtaagaattgaaatattgcaaatattctgatatctttgacaattcaaaacatgagctgaaaacagagactggtgacttcacaacccaccagggaggaatgcgggaaaaaccagttcctgctgcatttgcatctgagtctgcttcatccccccaactcacacatatggtcatttcaatgtttgaatgttctagaattaaccaaactgactttaactatcatgtttgatatcatttgaaatgtctcagtgcgattggtacaatggtctcattctctcagaaatagacataatcagaacaataaatatataacttcaggcatcttttgaaccactgagaGGGGTGtgccactaagtgtgaatgccttttgttatacattcacacccccttccttgagggaattcttggattatttaaggtaagggctaagaaaagctcaaggcgattctgcctaaccagatcagcccataacatggggtctgccccatgttatgtatatttcaaagtcaggaatgcatctttttcatcttggatttatctttgataatttgatgttttgtattgatcatttatgaattgactgattgaattggcataatacatttacctgactaataaattgttatgttttgaatgattcaaacagagttcgtgttattatctttagtagattgtggtaatttcatagcaccacaagcccctgttcaggttagtagcggactagaacacggtagacggagcattgcggcacgttacacgatgtctctagagctccgactaacaaattggcatttattcatgtatacttaggctgtaaaaggatatctaaggggatagtccttcacccgataaacttttaatactatttagatagtatagtgattattcaaagttactactagtttaagtacgactggtctgcttaattctatagtaatgatcgttatatgactaaatagctctgtctgatttaggaggtagcagacctatggggaccgcataaaaaatatcctgatctgagtaagtagggttctgcctttttaggatagcggtcaatcgcccctgtttagtgaccaagactgacatgcttgtgcttaagatattgtatactcggccggtacaagattcaggatgttatagagatcccaatgaacgagaataacataaaatgatgaaccgaagagaatattcaatcataatctaaaataatgtgaaagtaaacaaaataaccttctcaatgttttataattggagtcagataaaacgaggataaacatattaatattctaaaccatctcatactaaaattggagtcagatatgagttaagtttaatataaatcaacattgtgcactggaaagaccgaacatgcagtgaaccttcatccaccattggataccgtcattggaccaactggctggaccctacattggtttatttttaaacct
>TCONS_00036404
ATGGATTTATATCAACCAAGAGGTTTGGATCTTCTATTCTATCTTCAGCTGCTGTGGCGGACCAATAACAAAGAACACTCCAGATCCGGTCcacatcaaacaaatacaaatgagggCAACAAAAGGTTAGGCCATAACCTGAGAGGCCAAAAGCCTCCCATCTTGCATCTCAAAGCAAGAACCCCTGTGAGGCAAATCCCTCACCTCCTGCAgATCCAGCTTTGAACATTGCACCTTAAAATGCTCCGTAAAAGATATTATATGGAATCAATTTGAGCCGGAACACACCTCATGTTCACATTCTTATGCTGGCTCCCTGTTAAACAGGACTAAAATTTTGCAACACAATTATAAAAGTTGATTACCATTGTTCGGAGCATTACACTGACACATAGCCACAGGTAAACCCAGGCACATAGATAACACCTTAGTCTTCAAAGACCCAGGAGTCAAATCTCTTTAGTTAAGATCTTTTGTCCATGTTTATACGAACAAAACACATTAGCCTCACACACATAGAACAGAATAATTAATCTGATGACAGACGAGACAACAAACACCCTCTGACACCCTCTgtcagctgaaaagaaattacACATTTGCATGGCTTTGACAACAAATTGATGGTATAAAACTTCAATAGAGGCGAACTTGCCAATAAATTTAAGATAGATACACTGACTGTTGTGGGGATGGTTGACAAACCAGAGGGCCCCTGGTTTTCCAATCTATCACCAATAACAGGTATAAGTGctaaagtgattaaaattaaacCGAAGTGAGGACACTTCTAATAATCACTAGGacatttaaatttgacaaataccATCAATTGTGTTCAAGCCCCCCCacacgcacataaacacacacacacaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccacacaacatacacacacaaacacacacattattatagatataccttcataattatggttaaataatgtgattactatcatgtatgacaaatatcttcacgttttttcattttgaaaatgaatgtcatttatttgaatgtattgtcatgatgatatgttttatgatgcatactgcctgttatactgttttaataagttgcactgaccttttgatagctttaccttgagtaattcaaaccaagaatatttaatattctccCTATCATTATACCCTATCTCAGTGGTGACAAAGACTTATCTGTTTTTGATTGGACCATTTAAACAGATTGAAAGAGACCTGAGACCAGTTGTACGACTCGCACTTGCTGACTTTTATGctttgatcatatattttatgcTTAACCTCATGACTTTCTCCAATGCAGAATGACACAAGTTCATAACTGTTCAATCGCTGAGCCATCAAGTTGCTGTTTAGGTGTCCGAGAGAAGGCAGTGTATACACACTGTAGACCCCCACATGCCGATGTCTGCATATCTGGAGGTGACCAGATTCATCAGAAGAAGCAGACTATGAGAAGCCCACACGACGTGGACACTTTTGTCAGGGGAAGGACACAGTGGAGGCTATGAAGGCTTGTATGGACTGAATGAACTGTGCATTCGAATCAGGCTCCTCAAAAGAGGTGAAAACGAGCCTGGACCTGTTTAGCTACCTGCTAAACACGACTTACAACTGAAAATGCTGCAGAGACTGTCTTGAATTGCCCCTGAACGACCTCAACAAGGATACATAGTGACCCCATGGACACATTTATATCTGACCCACGGGATCAAATGGGGGTtatctgtaagaattgaaatattgcaaatattctgatatctttgacaattcaaaacatgagctgaaaacagagactggtgacttcacaacccaccagggaggaatgcgggaaaaaccagttcctgctgcatttgcatctgagtctgcttcatccccccaactcacacatatggtcatttcaatgtttgaatgttctagaattaaccaaactgactttaactatcatgtttgatatcatttgaaatgtctcagtgcgattggtacaatggtctcattctctcagaaatagacataatcagaacaataaatatataacttcaggcatcttttgaaccactgagaGGGGTGtgccactaagtgtgaatgccttttgttatacattcacacccccttccttgagggaattcttggattatttaaggtaagggctaagaaaagctcaaggcgattctgcctaaccagatcagcccataacatggggtctgccccatgttatgtatatttcaaagtcaggaatgcatctttttcatcttggatttatctttgataatttgatgttttgtattgatcatttatgaattgactgattgaattggcataatacatttacctgactaataaattgttatgttttgaatgattcaaacagagttcgtgttattatctttagtagattgtggtaatttcatagcaccacaagcccctgttcaggttagtagcggactagaacacggtagacggagcattgcggcacgttacacgatgtctctagagctccgactaacaaattggcatttattcatgtatacttaggctgtaaaaggatatctaaggggatagtccttcacccgataaacttttaatactatttagatagtatagtgattattcaaagttactactagtttaagtacgactggtctgcttaattctatagtaatgatcgttatatgactaaatagctctgtctgatttaggaggtagcagacctatggggaccgcataaaaaatatcctgatctgagtaagtagggttctgcctttttaggatagcggtcaatcgcccctgtttagtgaccaagactgacatgcttgtgcttaagatattgtatactcggccggtacaagattcaggatgttatagagatcccaatgaacgagaataacataaaatgatgaaccgaagagaatattcaatcataatctaaaataatgtgaaagtaaacaaaataaccttctcaatgttttataattggagtcagataaaacgaggataaacatattaatattctaaaccatctcatactaaaattggagtcagatatgagttaagtttaatataaatcaacattgtgcactggaaagaccgaacatgcagtgaaccttcatccaccattggataccgtcattggaccaactggctggaccctacattggtttatttttaaacct

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0048732 gland development biological_process
GO:0016070 RNA metabolic process biological_process
GO:0021532 neural tube patterning biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0035239 tube morphogenesis biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0001756 somitogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006364 rRNA processing biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0006396 RNA processing biological_process
GO:0031016 pancreas development biological_process
GO:0045165 cell fate commitment biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0021906 hindbrain-spinal cord boundary formation biological_process
GO:0048856 anatomical structure development biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0048863 stem cell differentiation biological_process
GO:0021915 neural tube development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0048339 paraxial mesoderm development biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0010002 cardioblast differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0030902 hindbrain development biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0048702 embryonic neurocranium morphogenesis biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0032040 small-subunit processome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036405 False 3733 lncRNA 0.38 2 37836126 37842006
TCONS_00036404 True 3231 lncRNA 0.39 3 37836126 37842006

Neighbor

gene id symbol gene type direction distance location
XLOC_017519 tatdn3 coding upstream 8743 37820990 ~ 37827383 (+)
XLOC_017518 atf3 coding upstream 35389 37794633 ~ 37800737 (+)
XLOC_017517 pex3 coding upstream 66823 37760493 ~ 37769303 (+)
XLOC_017516 aig1 coding upstream 99423 37661229 ~ 37736703 (+)
XLOC_017515 NA coding upstream 231001 37495088 ~ 37605125 (+)
XLOC_017521 flvcr1 coding downstream 2029 37844035 ~ 37862535 (+)
XLOC_017522 vash2 coding downstream 24165 37866171 ~ 37916522 (+)
XLOC_017523 galnt14 coding downstream 189433 38031439 ~ 38119890 (+)
XLOC_017524 NA coding downstream 286048 38128054 ~ 38138423 (+)
XLOC_017525 ehd3 coding downstream 359638 38201644 ~ 38241859 (+)
XLOC_017511 BX855623.1 non-coding upstream 555344 37256654 ~ 37280782 (+)
XLOC_017510 NA non-coding upstream 628753 36925790 ~ 37207373 (+)
XLOC_017509 NA non-coding upstream 925175 36860737 ~ 36910951 (+)
XLOC_017508 NA non-coding upstream 984830 36845114 ~ 36851296 (+)
XLOC_017530 NA non-coding downstream 531666 38373672 ~ 38447247 (+)
XLOC_017534 NA non-coding downstream 748502 38590508 ~ 38598879 (+)
XLOC_017538 BX511178.1 non-coding downstream 932966 38774972 ~ 38775087 (+)
XLOC_017541 NA non-coding downstream 1206053 39048059 ~ 39195117 (+)

Expression


Co-expression Network