RNA id: TCONS_00036404


Basic Information

Item Value
RNA id TCONS_00036404
length 3231
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id XLOC_017520
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 37836126 ~ 37842006 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGATTTATATCAACCAAGAGGTTTGGATCTTCTATTCTATCTTCAGCTGCTGTGGCGGACCAATAACAAAGAACACTCCAGATCCGGTCcacatcaaacaaatacaaatgagggCAACAAAAGGTTAGGCCATAACCTGAGAGGCCAAAAGCCTCCCATCTTGCATCTCAAAGCAAGAACCCCTGTGAGGCAAATCCCTCACCTCCTGCAgATCCAGCTTTGAACATTGCACCTTAAAATGCTCCGTAAAAGATATTATATGGAATCAATTTGAGCCGGAACACACCTCATGTTCACATTCTTATGCTGGCTCCCTGTTAAACAGGACTAAAATTTTGCAACACAATTATAAAAGTTGATTACCATTGTTCGGAGCATTACACTGACACATAGCCACAGGTAAACCCAGGCACATAGATAACACCTTAGTCTTCAAAGACCCAGGAGTCAAATCTCTTTAGTTAAGATCTTTTGTCCATGTTTATACGAACAAAACACATTAGCCTCACACACATAGAACAGAATAATTAATCTGATGACAGACGAGACAACAAACACCCTCTGACACCCTCTgtcagctgaaaagaaattacACATTTGCATGGCTTTGACAACAAATTGATGGTATAAAACTTCAATAGAGGCGAACTTGCCAATAAATTTAAGATAGATACACTGACTGTTGTGGGGATGGTTGACAAACCAGAGGGCCCCTGGTTTTCCAATCTATCACCAATAACAGGTATAAGTGctaaagtgattaaaattaaacCGAAGTGAGGACACTTCTAATAATCACTAGGacatttaaatttgacaaataccATCAATTGTGTTCAAGCCCCCCCacacgcacataaacacacacacacaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccacacaacatacacacacaaacacacacattattatagatataccttcataattatggttaaataatgtgattactatcatgtatgacaaatatcttcacgttttttcattttgaaaatgaatgtcatttatttgaatgtattgtcatgatgatatgttttatgatgcatactgcctgttatactgttttaataagttgcactgaccttttgatagctttaccttgagtaattcaaaccaagaatatttaatattctccCTATCATTATACCCTATCTCAGTGGTGACAAAGACTTATCTGTTTTTGATTGGACCATTTAAACAGATTGAAAGAGACCTGAGACCAGTTGTACGACTCGCACTTGCTGACTTTTATGctttgatcatatattttatgcTTAACCTCATGACTTTCTCCAATGCAGAATGACACAAGTTCATAACTGTTCAATCGCTGAGCCATCAAGTTGCTGTTTAGGTGTCCGAGAGAAGGCAGTGTATACACACTGTAGACCCCCACATGCCGATGTCTGCATATCTGGAGGTGACCAGATTCATCAGAAGAAGCAGACTATGAGAAGCCCACACGACGTGGACACTTTTGTCAGGGGAAGGACACAGTGGAGGCTATGAAGGCTTGTATGGACTGAATGAACTGTGCATTCGAATCAGGCTCCTCAAAAGAGGTGAAAACGAGCCTGGACCTGTTTAGCTACCTGCTAAACACGACTTACAACTGAAAATGCTGCAGAGACTGTCTTGAATTGCCCCTGAACGACCTCAACAAGGATACATAGTGACCCCATGGACACATTTATATCTGACCCACGGGATCAAATGGGGGTtatctgtaagaattgaaatattgcaaatattctgatatctttgacaattcaaaacatgagctgaaaacagagactggtgacttcacaacccaccagggaggaatgcgggaaaaaccagttcctgctgcatttgcatctgagtctgcttcatccccccaactcacacatatggtcatttcaatgtttgaatgttctagaattaaccaaactgactttaactatcatgtttgatatcatttgaaatgtctcagtgcgattggtacaatggtctcattctctcagaaatagacataatcagaacaataaatatataacttcaggcatcttttgaaccactgagaGGGGTGtgccactaagtgtgaatgccttttgttatacattcacacccccttccttgagggaattcttggattatttaaggtaagggctaagaaaagctcaaggcgattctgcctaaccagatcagcccataacatggggtctgccccatgttatgtatatttcaaagtcaggaatgcatctttttcatcttggatttatctttgataatttgatgttttgtattgatcatttatgaattgactgattgaattggcataatacatttacctgactaataaattgttatgttttgaatgattcaaacagagttcgtgttattatctttagtagattgtggtaatttcatagcaccacaagcccctgttcaggttagtagcggactagaacacggtagacggagcattgcggcacgttacacgatgtctctagagctccgactaacaaattggcatttattcatgtatacttaggctgtaaaaggatatctaaggggatagtccttcacccgataaacttttaatactatttagatagtatagtgattattcaaagttactactagtttaagtacgactggtctgcttaattctatagtaatgatcgttatatgactaaatagctctgtctgatttaggaggtagcagacctatggggaccgcataaaaaatatcctgatctgagtaagtagggttctgcctttttaggatagcggtcaatcgcccctgtttagtgaccaagactgacatgcttgtgcttaagatattgtatactcggccggtacaagattcaggatgttatagagatcccaatgaacgagaataacataaaatgatgaaccgaagagaatattcaatcataatctaaaataatgtgaaagtaaacaaaataaccttctcaatgttttataattggagtcagataaaacgaggataaacatattaatattctaaaccatctcatactaaaattggagtcagatatgagttaagtttaatataaatcaacattgtgcactggaaagaccgaacatgcagtgaaccttcatccaccattggataccgtcattggaccaactggctggaccctacattggtttatttttaaacct

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0048732 gland development biological_process
GO:0016070 RNA metabolic process biological_process
GO:0021532 neural tube patterning biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0035239 tube morphogenesis biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0001756 somitogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006364 rRNA processing biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0006396 RNA processing biological_process
GO:0031016 pancreas development biological_process
GO:0045165 cell fate commitment biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0021906 hindbrain-spinal cord boundary formation biological_process
GO:0048856 anatomical structure development biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0048863 stem cell differentiation biological_process
GO:0021915 neural tube development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0048339 paraxial mesoderm development biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0010002 cardioblast differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0030902 hindbrain development biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0048702 embryonic neurocranium morphogenesis biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0032040 small-subunit processome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00034813 lncRNA upstream 71474 37760996 ~ 37764652 (+) True XLOC_017517
TCONS_00034808 lncRNA upstream 231001 37495157 ~ 37605125 (+) False XLOC_017515
TCONS_00034809 lncRNA upstream 257965 37495088 ~ 37578161 (+) False XLOC_017515
TCONS_00034820 lncRNA downstream 24617 37866623 ~ 37884806 (+) False XLOC_017522
TCONS_00036641 lncRNA downstream 286048 38128054 ~ 38138423 (+) False XLOC_017524
TCONS_00036642 lncRNA downstream 288446 38130452 ~ 38138423 (+) False XLOC_017524
TCONS_00036406 lncRNA downstream 289730 38131736 ~ 38136741 (+) True XLOC_017524
TCONS_00036643 lncRNA downstream 531666 38373672 ~ 38447247 (+) True XLOC_017530
TCONS_00034817 mRNA upstream 8743 37825804 ~ 37827383 (+) True XLOC_017519
TCONS_00034816 mRNA upstream 9066 37820992 ~ 37827060 (+) False XLOC_017519
TCONS_00034814 mRNA upstream 35389 37794633 ~ 37800737 (+) True XLOC_017518
TCONS_00034812 mRNA upstream 66823 37760493 ~ 37769303 (+) False XLOC_017517
TCONS_00034811 mRNA upstream 103225 37661547 ~ 37732901 (+) True XLOC_017516
TCONS_00034818 mRNA downstream 2029 37844035 ~ 37862535 (+) True XLOC_017521
TCONS_00034819 mRNA downstream 24165 37866171 ~ 37916522 (+) False XLOC_017522
TCONS_00034821 mRNA downstream 24680 37866686 ~ 37899313 (+) False XLOC_017522
TCONS_00034822 mRNA downstream 24855 37866861 ~ 37896526 (+) True XLOC_017522
TCONS_00034823 mRNA downstream 189433 38031439 ~ 38086721 (+) False XLOC_017523
TCONS_00034815 other upstream 9990 37820990 ~ 37826136 (+) False XLOC_017519
TCONS_00034779 other upstream 1555962 36280048 ~ 36280164 (+) True XLOC_017499
TCONS_00034762 other upstream 2413299 35422698 ~ 35422827 (+) True XLOC_017490
TCONS_00034760 other upstream 2453509 35382438 ~ 35382617 (+) False XLOC_017489
TCONS_00034756 other upstream 2547155 35279996 ~ 35288971 (+) False XLOC_017488
TCONS_00034825 other downstream 271791 38113797 ~ 38119890 (+) True XLOC_017523
TCONS_00034845 other downstream 778660 38620666 ~ 38648890 (+) False XLOC_017535
TCONS_00034847 other downstream 778728 38620734 ~ 38633460 (+) True XLOC_017535
TCONS_00034852 other downstream 932966 38774972 ~ 38775087 (+) True XLOC_017538
TCONS_00034855 other downstream 1068235 38910241 ~ 39046180 (+) True XLOC_017540

Expression Profile

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