RNA id: TCONS_00034816


Basic Information

Item Value
RNA id TCONS_00034816
length 1072
RNA type mRNA
GC content 0.39
exon number 10
gene id XLOC_017519
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 37820990 ~ 37827383 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAAAATGCGTTCCCTGCTCATACACGAGCATATTAAAAATGTCGTAAAACACCAAAACGAGATTGTTCTTCAAATGCAGCTTTAACACAGAAACGAAACGTGCTCAACATATTTTTAGATTCACTAAAACTATGGCTAGAGGGTTTATTGACTGTCACTGTCACATTTCAGCGAGTGAGTTTACCACGGACACTGATGATGTACTTCTGAGAGCTAAAAAGGCTGGAGTGAAAGCTCTTGTTGCAGTGACAGAGGGAGCCAGTGAGTTTGAGAAAGTTATTCAGTTGTCAAAAACTTATCCAGGTTTTGTGTTCCCTTGTTTTGGCATCCATCCCCTTCAAGGATCAGGGCAAGATTTGCACAGTGTAAGGGTTCAGGACCTGGATCCATTCCTTTATTTGTTTCAGACGTACAAGGATGATATTGTTGCAATTGGAGAGATTGGTCTTGACTTTACCCCATGGTACTCAAGCACTACTCAAGAGCGAGATGAACAAATGAAAGTCTTTATAAAACAACTTGAAATATCCAAAGAACTGGATTTGCCTGTGAATGTACATTCCCGCTCATCAGCTAAGGTCACCATAGCCACAATGAAAGAACTAGGGATAAGACAAGCTTTATTGCATAATTTTGCTGGGAAGCCATCGGTTGCAATGGAAGGGGTTCAGGCTGGATTCTGCTTCTCTTTTCCACCTGCTGTCAGCAAAAACGAACAGAGAGCAAAATTAATCAGACAGATTCCACTGGAGCACGTTTGCCTTGAGACAGACTCTCCAGCCTTGGGACTTGACAAACATGGAAGAAATGAGCCCAGCAATGTTAGAATCACATGTGAATACATTGCAAAGGTTAAAGGAATATCATCAGATGTAGTTATGGAAGTCACAACTCAAAATGCCCTTCGATTATTTTCCAAATTAAAAATCTAACTTTATCCCACTTTCATTTAAACTGGGTATTTTTATGCGAAGGTGAGCACCTGTTATGTATTTTACACATTGAAAATGAACTGATCAGTATGAAACTCTTCAATATTTGATCAATAAGAAAGTGTTTAATCTTTGAAAA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0004518 nuclease activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016788 hydrolase activity, acting on ester bonds molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-192 Predicted to enable endodeoxyribonuclease activity, producing 5'-phosphomonoesters and metal ion binding activity. Predicted to be located in nucleus. Orthologous to human TATDN3 (TatD DNase domain containing 3).

Ensembl:

ensembl_id ENSDART00000064692

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00034813 lncRNA upstream 56340 37760996 ~ 37764652 (+) True XLOC_017517
TCONS_00034808 lncRNA upstream 215867 37495157 ~ 37605125 (+) False XLOC_017515
TCONS_00034809 lncRNA upstream 242831 37495088 ~ 37578161 (+) False XLOC_017515
TCONS_00036405 lncRNA downstream 9066 37836126 ~ 37842006 (+) False XLOC_017520
TCONS_00036404 lncRNA downstream 9066 37836126 ~ 37842006 (+) True XLOC_017520
TCONS_00034820 lncRNA downstream 39563 37866623 ~ 37884806 (+) False XLOC_017522
TCONS_00036641 lncRNA downstream 300994 38128054 ~ 38138423 (+) False XLOC_017524
TCONS_00036642 lncRNA downstream 303392 38130452 ~ 38138423 (+) False XLOC_017524
TCONS_00034814 mRNA upstream 20255 37794633 ~ 37800737 (+) True XLOC_017518
TCONS_00034812 mRNA upstream 51689 37760493 ~ 37769303 (+) False XLOC_017517
TCONS_00034810 mRNA upstream 84289 37661229 ~ 37736703 (+) False XLOC_017516
TCONS_00034811 mRNA upstream 88091 37661547 ~ 37732901 (+) True XLOC_017516
TCONS_00034807 mRNA upstream 351352 37457642 ~ 37469640 (+) True XLOC_017514
TCONS_00034818 mRNA downstream 16975 37844035 ~ 37862535 (+) True XLOC_017521
TCONS_00034819 mRNA downstream 39111 37866171 ~ 37916522 (+) False XLOC_017522
TCONS_00034821 mRNA downstream 39626 37866686 ~ 37899313 (+) False XLOC_017522
TCONS_00034822 mRNA downstream 39801 37866861 ~ 37896526 (+) True XLOC_017522
TCONS_00034823 mRNA downstream 204379 38031439 ~ 38086721 (+) False XLOC_017523
TCONS_00034779 other upstream 1540828 36280048 ~ 36280164 (+) True XLOC_017499
TCONS_00034762 other upstream 2398165 35422698 ~ 35422827 (+) True XLOC_017490
TCONS_00034760 other upstream 2438375 35382438 ~ 35382617 (+) False XLOC_017489
TCONS_00034756 other upstream 2532021 35279996 ~ 35288971 (+) False XLOC_017488
TCONS_00034743 other upstream 2757011 35062806 ~ 35063981 (+) True XLOC_017485
TCONS_00034825 other downstream 286737 38113797 ~ 38119890 (+) True XLOC_017523
TCONS_00034845 other downstream 793606 38620666 ~ 38648890 (+) False XLOC_017535
TCONS_00034847 other downstream 793674 38620734 ~ 38633460 (+) True XLOC_017535
TCONS_00034852 other downstream 947912 38774972 ~ 38775087 (+) True XLOC_017538
TCONS_00034855 other downstream 1083181 38910241 ~ 39046180 (+) True XLOC_017540

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000029_01297680_01300190.mRNA True 518 mRNA 0.38 6 CI01000029 1297611 ~ 1300246 (+)