RNA id: TCONS_00034810


Basic Information

Item Value
RNA id TCONS_00034810
length 1835
RNA type mRNA
GC content 0.42
exon number 6
gene id XLOC_017516
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 37661229 ~ 37736703 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGAcgtttttttattgtgtgtttttttcttagcaacttacattttaaagcatataATAACTTTATTCGAAAAGAAACGAAATCAATAATCTCAAACCACTGAGCATGCGTGTGTACCAATAACAGGGACAAGCGGctccacacacacagagacagcgATGCTTGTTCCTATAGCAACAGCCTCTCGCGCACATCCGCCGCCTCCAGCCTCGTCTTTACCGGATCCGCGCGgcctctcctcctcctccccacCGCACAGCAGCATCCCTCCGTCGACAGGACATTTCCTCACACGGAAATACGACGGGGGAAGGAAAATGGCGCTCATCCCATCACAGATCCTCAGAGTAGCGATCCTCCTCTCTTATTTTTCCATCCTCTGCAATTACAAAGCCATAGACATGCCCGCGCATCAAACATACGGCGGTAGCTGGAAGTTTCTTACGTTCATAGATTTGGTTATTCAGGCGGTGTTTTTCGGAGTGTGTGTCCTGACTGACCTATCGAGCCTTTTGACAAAAGGCAGCGCCAGTATGGAGCAAGAGAGACAGCTGAGGAAGCTGATTGGCTTACGTGATTGGATGATGGCTGTTCTGGCCTTTCCCGTTGGGGTGTTTGTGGTGACCATGTTCTGGACTCTTTACTTGTACGACAGAGATTTGATTTACCCAAGACTGCTGGACAACTTTATACCTCAGTGGCTAAACCATGGCATGCACACAACAGTTCTTCCTTTCATCATAATTGAGATGAGAACAACACACCACCGGTATCCCAGCAGGCCCTGTGGACTCTTGGCGGTGTGCGCGTTTGCAGTGGGATACGTTGTATGGATGTGCTGGGTGCACAGCATGACGGGGGTGTGGGTTTATCCTCTGCTGGAGCACATTGGGCCCACGGCCAGAATACTCTTCTTCTTCTGCCTCATGGCTCTGATCAATGTCTACTACGTCTTGGGAGAAATTCTGAACAACTACATCTGGGATTCCTCAAAGTGTAAGCATTCTGGAATCAGACAAGACCAAAACTGACTGAGGATCATCACAGACTCTTTTTCTTCCTCTGAGGTCTAATCAGACTTTAACTTCAGTTTAAACcaacataatatatttattttgctctCCTTTTATCTcattttactcaccctcattgATGCCCCTTAACTGAAAAATAAAGCACAGACCTGCATTGGCTTGAACATTAAGTTGAATAATTCATGTATTGAACTTCCGGTATGAATGTTACAGCGTTTCAGAATACCTCAAGCTTTGCGTGATCACTGAATTGTGTGTACTGAACACATGCTGCCGTCACGTGTCCAAAGCCAGTGTTACAAACAACCATACATATTACATATTGCATATATCACTCATGATGGGTGTTATTTACTTAAGAGATGATTTATGGgtattctgtcattatttgcccctgtaaaataaataagcaacacCTTTATATCCACATTGGCATATGGCAAACGACAGTGAGCACAAGGTAATTCAGTGTTTGTGGTCTTTCTGAAgccatatatttttgtttttttaatttttggattAAGCTGAGCTGATAATGCCACATCGTATTCAAACATTGCCAGAAGGGAACGTGACAGGCCTGCCTCAATTTggccacactttacaataagttttcaTTTGTTAGCATTTGCTAACTTGAACTATatgagcaatatatatattttaggcaTTCATTAAACTTTGTAAAtgctaataaatatatttgtttgttttttttaatggttaattgtattttttttatcattatttaaaaatgtatgtattgtttaaaataaagtcTAAGGGGTTTGTtcactcca

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041014-358 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system. Orthologous to human AIG1 (androgen induced 1).

Ensembl:

ensembl_id ENSDART00000138539

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00034808 lncRNA upstream 56104 37495157 ~ 37605125 (+) False XLOC_017515
TCONS_00034809 lncRNA upstream 83068 37495088 ~ 37578161 (+) False XLOC_017515
TCONS_00036639 lncRNA upstream 83068 37495099 ~ 37578161 (+) False XLOC_017515
TCONS_00036640 lncRNA upstream 83068 37575120 ~ 37578161 (+) True XLOC_017515
TCONS_00034798 lncRNA upstream 380447 37256654 ~ 37280782 (+) True XLOC_017511
TCONS_00034813 lncRNA downstream 24293 37760996 ~ 37764652 (+) True XLOC_017517
TCONS_00036405 lncRNA downstream 99423 37836126 ~ 37842006 (+) False XLOC_017520
TCONS_00036404 lncRNA downstream 99423 37836126 ~ 37842006 (+) True XLOC_017520
TCONS_00034820 lncRNA downstream 129920 37866623 ~ 37884806 (+) False XLOC_017522
TCONS_00036641 lncRNA downstream 391351 38128054 ~ 38138423 (+) False XLOC_017524
TCONS_00034805 mRNA upstream 191589 37383034 ~ 37469640 (+) False XLOC_017514
TCONS_00034807 mRNA upstream 191589 37457642 ~ 37469640 (+) True XLOC_017514
TCONS_00034806 mRNA upstream 197920 37393134 ~ 37463309 (+) False XLOC_017514
TCONS_00034804 mRNA upstream 247262 37383034 ~ 37413967 (+) False XLOC_017514
TCONS_00034802 mRNA upstream 281651 37300296 ~ 37379578 (+) False XLOC_017513
TCONS_00034812 mRNA downstream 23790 37760493 ~ 37769303 (+) False XLOC_017517
TCONS_00034814 mRNA downstream 57930 37794633 ~ 37800737 (+) True XLOC_017518
TCONS_00034816 mRNA downstream 84289 37820992 ~ 37827060 (+) False XLOC_017519
TCONS_00034817 mRNA downstream 89101 37825804 ~ 37827383 (+) True XLOC_017519
TCONS_00034818 mRNA downstream 107332 37844035 ~ 37862535 (+) True XLOC_017521
TCONS_00034779 other upstream 1381065 36280048 ~ 36280164 (+) True XLOC_017499
TCONS_00034762 other upstream 2238402 35422698 ~ 35422827 (+) True XLOC_017490
TCONS_00034760 other upstream 2278612 35382438 ~ 35382617 (+) False XLOC_017489
TCONS_00034756 other upstream 2372258 35279996 ~ 35288971 (+) False XLOC_017488
TCONS_00034743 other upstream 2597248 35062806 ~ 35063981 (+) True XLOC_017485
TCONS_00034815 other downstream 84287 37820990 ~ 37826136 (+) False XLOC_017519
TCONS_00034825 other downstream 377094 38113797 ~ 38119890 (+) True XLOC_017523
TCONS_00034845 other downstream 883963 38620666 ~ 38648890 (+) False XLOC_017535
TCONS_00034847 other downstream 884031 38620734 ~ 38633460 (+) True XLOC_017535
TCONS_00034852 other downstream 1038269 38774972 ~ 38775087 (+) True XLOC_017538

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000029_01206589_01231131.mRNA True 2654 mRNA 0.39 4 CI01000029 1204463 ~ 1231158 (+)