Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00034817 |
| length | 706 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 7 |
| gene id | XLOC_017519 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007131.7 |
| NCBI id | CM002904.2 |
| chromosome length | 55201332 |
| location | 37820990 ~ 37827383 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0005634 | nucleus | cellular_component |
| GO:0004518 | nuclease activity | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0016788 | hydrolase activity, acting on ester bonds | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050522-192 | Predicted to enable endodeoxyribonuclease activity, producing 5'-phosphomonoesters and metal ion binding activity. Predicted to be located in nucleus. Orthologous to human TATDN3 (TatD DNase domain containing 3). |
| ensembl_id | ENSDART00000152865 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00034813 | lncRNA | upstream | 61152 | 37760996 ~ 37764652 (+) | True | XLOC_017517 |
| TCONS_00034808 | lncRNA | upstream | 220679 | 37495157 ~ 37605125 (+) | False | XLOC_017515 |
| TCONS_00034809 | lncRNA | upstream | 247643 | 37495088 ~ 37578161 (+) | False | XLOC_017515 |
| TCONS_00036405 | lncRNA | downstream | 8743 | 37836126 ~ 37842006 (+) | False | XLOC_017520 |
| TCONS_00036404 | lncRNA | downstream | 8743 | 37836126 ~ 37842006 (+) | True | XLOC_017520 |
| TCONS_00034820 | lncRNA | downstream | 39240 | 37866623 ~ 37884806 (+) | False | XLOC_017522 |
| TCONS_00036641 | lncRNA | downstream | 300671 | 38128054 ~ 38138423 (+) | False | XLOC_017524 |
| TCONS_00036642 | lncRNA | downstream | 303069 | 38130452 ~ 38138423 (+) | False | XLOC_017524 |
| TCONS_00034814 | mRNA | upstream | 25067 | 37794633 ~ 37800737 (+) | True | XLOC_017518 |
| TCONS_00034812 | mRNA | upstream | 56501 | 37760493 ~ 37769303 (+) | False | XLOC_017517 |
| TCONS_00034810 | mRNA | upstream | 89101 | 37661229 ~ 37736703 (+) | False | XLOC_017516 |
| TCONS_00034811 | mRNA | upstream | 92903 | 37661547 ~ 37732901 (+) | True | XLOC_017516 |
| TCONS_00034807 | mRNA | upstream | 356164 | 37457642 ~ 37469640 (+) | True | XLOC_017514 |
| TCONS_00034818 | mRNA | downstream | 16652 | 37844035 ~ 37862535 (+) | True | XLOC_017521 |
| TCONS_00034819 | mRNA | downstream | 38788 | 37866171 ~ 37916522 (+) | False | XLOC_017522 |
| TCONS_00034821 | mRNA | downstream | 39303 | 37866686 ~ 37899313 (+) | False | XLOC_017522 |
| TCONS_00034822 | mRNA | downstream | 39478 | 37866861 ~ 37896526 (+) | True | XLOC_017522 |
| TCONS_00034823 | mRNA | downstream | 204056 | 38031439 ~ 38086721 (+) | False | XLOC_017523 |
| TCONS_00034779 | other | upstream | 1545640 | 36280048 ~ 36280164 (+) | True | XLOC_017499 |
| TCONS_00034762 | other | upstream | 2402977 | 35422698 ~ 35422827 (+) | True | XLOC_017490 |
| TCONS_00034760 | other | upstream | 2443187 | 35382438 ~ 35382617 (+) | False | XLOC_017489 |
| TCONS_00034756 | other | upstream | 2536833 | 35279996 ~ 35288971 (+) | False | XLOC_017488 |
| TCONS_00034743 | other | upstream | 2761823 | 35062806 ~ 35063981 (+) | True | XLOC_017485 |
| TCONS_00034825 | other | downstream | 286414 | 38113797 ~ 38119890 (+) | True | XLOC_017523 |
| TCONS_00034845 | other | downstream | 793283 | 38620666 ~ 38648890 (+) | False | XLOC_017535 |
| TCONS_00034847 | other | downstream | 793351 | 38620734 ~ 38633460 (+) | True | XLOC_017535 |
| TCONS_00034852 | other | downstream | 947589 | 38774972 ~ 38775087 (+) | True | XLOC_017538 |
| TCONS_00034855 | other | downstream | 1082858 | 38910241 ~ 39046180 (+) | True | XLOC_017540 |
