RNA id: TCONS_00034820


Basic Information

Item Value
RNA id TCONS_00034820
length 699
lncRNA type retained_intron
GC content 0.48
exon number 4
gene id XLOC_017522
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 37866171 ~ 37916522 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGCGATCATAAGTGATTTGgggaacagcaagaggaacccccACCATCGGAAGACTTCTAACAATGACCGGACCAAGCGCCACCAGCAGCGGCTCCGCGGCCAAGATCAGTAGACACGGACGGTCCAAAAGCACCAGTGCATACTGTCACAGCACGGGTCCTGCTGCTGAATCCTCCCCGTCCACTGCCGCAAATAACACCGGCAGGTCGTCCGGCGAGGAAGAGGAGAAAGACGGCGGGGTCCCGTTTTTCGTCAACAGGACGGGCTTTCCCATAGAGAGTGTCACCTGGGAAAGAATGTGGTCTCATGTCGCCAAAGTTCACCCTGATGGACAGGAGATGGTGGACAGAATACGAAATGCAACACTCCTCCCTAAACACTCCGTGCCATCAGTTCCTAACTTTAAGCCATCAATGTCTGTGCCTGATTGGCTCCATGCCGTCCAGAACTACATGAGAAACCTGCAATACAACCATACGGGAACGCAGTTCTTTGAGATTAAGAAAACCCGACCTCTGAGTGGgTTGATGGAGACTGCGAGAGAGATGATACGAGAATCCCTTCCCATCAAATGCCTTGAAGCAGTTATCCTTGGGATGTATCCTTTAGCTTTAAGGACAGAATTTTGTCAAATATTCACATAAATTCTCtcaattgttataaaataaaaatgtttttcattaattgaattatagtat

Function

GO:

id name namespace
GO:0045765 regulation of angiogenesis biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041014-355 Predicted to be involved in regulation of angiogenesis. Predicted to be active in cytoplasm. Is expressed in musculature system; pharyngeal arch; segmental plate; somite; and telencephalon. Orthologous to human VASH2 (vasohibin 2).

Ensembl:

ensembl_id ENSDART00000153051

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036405 lncRNA upstream 24617 37836126 ~ 37842006 (+) False XLOC_017520
TCONS_00036404 lncRNA upstream 24617 37836126 ~ 37842006 (+) True XLOC_017520
TCONS_00034813 lncRNA upstream 101971 37760996 ~ 37764652 (+) True XLOC_017517
TCONS_00034808 lncRNA upstream 261498 37495157 ~ 37605125 (+) False XLOC_017515
TCONS_00034809 lncRNA upstream 288462 37495088 ~ 37578161 (+) False XLOC_017515
TCONS_00036641 lncRNA downstream 243248 38128054 ~ 38138423 (+) False XLOC_017524
TCONS_00036642 lncRNA downstream 245646 38130452 ~ 38138423 (+) False XLOC_017524
TCONS_00036406 lncRNA downstream 246930 38131736 ~ 38136741 (+) True XLOC_017524
TCONS_00036643 lncRNA downstream 488866 38373672 ~ 38447247 (+) True XLOC_017530
TCONS_00036644 lncRNA downstream 705702 38590508 ~ 38598879 (+) True XLOC_017534
TCONS_00034818 mRNA upstream 4088 37844035 ~ 37862535 (+) True XLOC_017521
TCONS_00034817 mRNA upstream 39240 37825804 ~ 37827383 (+) True XLOC_017519
TCONS_00034816 mRNA upstream 39563 37820992 ~ 37827060 (+) False XLOC_017519
TCONS_00034814 mRNA upstream 65886 37794633 ~ 37800737 (+) True XLOC_017518
TCONS_00034812 mRNA upstream 97320 37760493 ~ 37769303 (+) False XLOC_017517
TCONS_00034823 mRNA downstream 146633 38031439 ~ 38086721 (+) False XLOC_017523
TCONS_00034824 mRNA downstream 147337 38032143 ~ 38116547 (+) False XLOC_017523
TCONS_00034826 mRNA downstream 316838 38201644 ~ 38241859 (+) True XLOC_017525
TCONS_00034827 mRNA downstream 372960 38257766 ~ 38277584 (+) False XLOC_017526
TCONS_00034828 mRNA downstream 373012 38257818 ~ 38291952 (+) False XLOC_017526
TCONS_00034815 other upstream 40487 37820990 ~ 37826136 (+) False XLOC_017519
TCONS_00034779 other upstream 1586459 36280048 ~ 36280164 (+) True XLOC_017499
TCONS_00034762 other upstream 2443796 35422698 ~ 35422827 (+) True XLOC_017490
TCONS_00034760 other upstream 2484006 35382438 ~ 35382617 (+) False XLOC_017489
TCONS_00034756 other upstream 2577652 35279996 ~ 35288971 (+) False XLOC_017488
TCONS_00034825 other downstream 228991 38113797 ~ 38119890 (+) True XLOC_017523
TCONS_00034845 other downstream 735860 38620666 ~ 38648890 (+) False XLOC_017535
TCONS_00034847 other downstream 735928 38620734 ~ 38633460 (+) True XLOC_017535
TCONS_00034852 other downstream 890166 38774972 ~ 38775087 (+) True XLOC_017538
TCONS_00034855 other downstream 1025435 38910241 ~ 39046180 (+) True XLOC_017540

Expression Profile

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