RNA id: TCONS_00034802


Basic Information

Item Value
RNA id TCONS_00034802
length 4874
RNA type mRNA
GC content 0.37
exon number 8
gene id XLOC_017513
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 37300296 ~ 37379578 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaaaaaaaatttgcatgcaACTTATTTTAATGcatctaatatttattttttcccagtactgggttgcagctaagggcatgcgctgtgtaaaacatatgctggataagttggtgaatgaagggactaagctaaaggaaaattaatgaataatatttattgttttattgatttatgaACTTACACATGTCTTTAATCAGTGTTTTCTgtaaaatgtctttttattttgcattttgcaaTATGTTAAAAAACGGTATGCGAGAAAATGAAAAGCTattatatacactatatacatatacacttacATTGTTTCCTTTTGTCtgacacacaaacaaaactttttaataGATTTCTCTTAATATGAGTAATGCCATTTCCTACTCCTCGCCTATGGAGGTCAGTAAAGGCGTGGCTGCGCGCTCACGTGACGACGCGGAAGCAGTTCAGTCATCTTTGTTGTTAGCCGTTTTTTCGGCTCTTGCTTACCGTAGAAGTTTGTAACAGTGAGTTTTCTTCAGGATGGCGCTCCCGCCGCAGCTGAAGGCGATCCAGCATTACTTAAGAACAGCGCAAGAGCACGAGAAAAGAGACCCGGTGGTCGCTTATTACTGTCGACTTTATGCCATGCAGACAGGAATGAAACTAGATAGCAAGACTCCAGAGTGTCGAAAGTTTCTTGTGAAACTAATGGATCAGTTGGAAATGATGAAGAAGGAACTTGGTGACAACGAATCCATCTCACAGGAAATAGTCGGCAATGCTCATATTGAGAATTACGCCTTGAAAATGTTCCTCTATGCAGACAATGAAGATCGATCAGAACGTTTCCACAAGAATATGATCAAGTCCTTCTACACCTCAAGTCTCCTGTTTGATGTGTTGAGTGTCTTTGGCGAATTGTCAGAAGAGAACCTCCAGCAACGGAAGTACGCCAAGTGGAAAGCAGCCTACATCCACAACTGCCTGAAGAATGGCGAGACTCCACAGCCCGGGCCTATTGGAATGGAGGGGGAAGCATATGATGATGAATTTGGTGCTGAGGGTGGTGGTCCCTCACAAGCTCCTGACAATCCTCCTCATTCCCAGCCTTCTTTCCGTGGCCATCCATCAGACCAACCCCCAACCTCCAATTTCAGCAATATTCAGATACCTCCTGGGTCACACGCTCCAGCCAATACACCTGCAGAGATACCCCATCCAGAAGCAGCACAGCCTGTCAAACCAGTGCCTGTTCCTCGAACCATGCCAGTGGTCGATCCTTCACTTCTAAACAATACCCAAGAAGgTGACGTGCGGCTCACACCAGAAGACTTCACTCGGGCtcagaaatactgtaaatacGCAGGCAGCGCACTGCAATATGAGGACGTGGGCACCGCCGTCCAGAATCTGCAGAAGGCCCTGAAGCTACTCACCACTGGCAAAGAATGAGAGCATTGTGCCGTCCCCTTAACACCACTTTATCAGAGATCTGGCTCAGAGAAACTGAAAAAGAGCCATTTCCCCCAGTCTTGCCTGAATCAAAAAGAAGACACCCCCACATCACTCAATACAACATCTGTTTCTCACATATTAGATGTCAATAGTTATTCATTACTACACCCATGAGATAAagatgcaacacacacacacacacaaaagtcagGTGCATGTGTAAAAAATCTTCTTACATTCTGAGGAGTTCATACATATTTATGGTTTGGGTGTTTGCTTTTTTTCTGGCCTTGACAAAAATTGGGTTAGATATGCATAGACATGACAGCCCGTCTGAAGATGTCTCTTAAACAAAAACTCTAATCTCACCTCAGGCTCTGTGAAACAGGAGCATTGGAGACTTTATGACCTTAACTACTTTTACTACTTTCCGTTTGCTTCTCTGTATATGCTTCAGGTGGAAGGATTCTGTTAGTTTTCAGATCTTATTATGATCAAGAATAAACCTTTTTTTGATCCACTGTTTTTGGCATTTGctgtccatgttttttttttttttttttaatcgttttaaaaataattttagctTTTGGTAGTAAAACGTTAAATTGTACCAGTCATGATACTGATAGTAAAGATGGCTTCTGTTTGGGATCTGGTGCCATAGACCCTTTTCACGAGACTGTTTGATATGACTGTTAACAGTCATCAGCATATTTgatccttaaaagtttttaatatttagattttttttttttaaacatcaatttatatgtgtttacgctcaccggccactttattaggtacaactgctcgttTCTATTGACTAAGTCATTCACAttacagcaactcaatgcatttaggcttgtagacatggttaagacgatctgctgaagttcaaaccaagcatcagaagaagaagaaaggtgatttaagtgactttgattgtggcatggttgttggtgccagatgggctggtctgagtatttcagaaactgctgatatactgggatccaaaaaagagaaaatatctagtgagcaaGAGTTAtgttggcgcaaatgccttgttgataaaAGTGGAGAATgcccagactggttcaagctgatagaaagccaacagtaagacaaataaccactcgatacaactgagttgtgcagaagagcatctctaaaagcACAACACAtgaaaccttgaggcggatgggctacagcggCAAAAGACCACATCTGtcggctaagaacaggaaacaggcAAGAATTCACTcaagctcaccaaaatttgacaacagaagattggaataACATTGCTTAGcttgatgagtcttgatttctactGTGACATTTGAATAGTAGGGTCAGAggttggtgtcaacaacatgaaagcatggatccattctgcacTGTACcaactgttcaggctggtggtggttgtgtaatggtgtgggggttatctcttggcacactttgggcccattagtgctaattgagcatcatgtcaacgccacagcctacctaaatatatatttgttgttctCTCCAATTCACTCTGCTACAAGTTTACCCATCTATGACGTCTTCCGCTACTAAGAAACCCGTAAATGTGAGAAGTGGCCATTGTGCATTTTTAATGATTGCAGCACAAGTGGTCAGCTGAAGTGGATTATCCTGTTCACCTGGTATTAACGTGCATTGAATTGTGCATGCTATTTCATCATGCTTAACTTCACTTTTGCAGGAACTATATGTATgcaaaagaaaaatctgatttataTTACTTTAAGTCTACAAATAGGATTTGACACAACTAAGATGTATGTCCTGAATGCATAATTGAGGTTTATAAGAGTGTTAACTGGCTTCTGTACAAAAGGGAAAAACACTATCAATTAAAAGCCAAATCAATTGGATATTCATGGAATTTggctaaaataaattacaaaggCTTTCAGGCATTTTCTTCTGTTGATTTTACCTTTGATAAATGCTCGAGtctgaataaaatgtttatgtttcAGGTGGCAGTACAAGAAGGTAAGATTTCTACAAGATTGAAATATGGGGGGGTACTTAAAGGTAGCGCAGTTagcatattataatatatttggcAATTTTACCTAGTCAGTCATATGCATCAATGAACTTGACCAGTATATTGTACATAATGAGGAGTTAATTCATTATGCTGTTCACATTCCATCGCACTCTTACAGGAACGACCACATGGAGGAGTTCCTTTATTGTGTGCATTGTTATGCATCATCAATAAGGTGTGTATTGATTTCTATCTCTGTTGCAGTTGGGGTGGTagtgtaaaattacagatttttgtATAGTTATTTGTTTAAGTaaaatatactcaccggccactttattaggtacaacagtccaactgctcgttaatgccaATTTGTAATCGGGTAAAGTGGCCGGGCAGTGTATACACTTAAAGTCAAacttattaaccctcctgtgaacttttaattattaaagaAGTAGTGCTGTTTAACATTTTCAACtctattttaaacataatagtttaactaatcTCCTTTGTCTTTGCCAGTATGTCTAAAAGTGcattaggttaattaagcaagtcatagGACAACAGTGGGTAGTTCTATAGCCACTTGggcaaaactattttttaaggGGACTGaaaatattgaccttgaaaaataaaaaaataaaaaaaacttcttttattccagcccccaaaaaaaaaaaaaaaaaacgacaataaatgactttctccagaagaaaaattatgtttgtatgaaatactgtgaaatattccaTTAAACTGTTTTAGTGATTATAACATGCACATGACTTTCAGATGCCCAAACATTTTTTCATAAAGAGAGGTGAAAATAATAGGTTTTATGTGAATtctgtaaatgcaatgtaaaatgtaaaagcaaAACTCTCTACAGCATTTTGCATTTCAGGTCTCAGCAGCAGTCacattattatttcataaaactTCTAATGATCTTGAATATACAGAATGAAGGAAAAGACAGGATGCTAATATAATCATGATGGTTAAtcaatttattcaccctcatgtcctTCCACACCCATAAGACTtttgaaaatttaaattaattttaagaaaatgaATACAACCTGAAAGATTTAAGCATATCTGTTGAAACGTTATTTGATAGCTTTAATCCCAATTTTATGCAAATTGTTGtgtggaaaaaatatatttttgaatttgatttatttaatgtcttattAGATTCCGTTTTAAACAATGAGAAAGTCTTCTGGGCTTGGAACAGCATGAGTAAATGctggagtatatatatatatatatatatatatatatatatatatatatattttttttttttttttcctccaggtgacctatatttatgttatttgttaATAAGAATTCTTAAAAAAAGAGACCATTTCATgaataaatc

Function

GO:

id name namespace
GO:0032511 late endosome to vacuole transport via multivesicular body sorting pathway biological_process
GO:0005771 multivesicular body cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04144 Endocytosis
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040426-2154 Predicted to be involved in late endosome to vacuole transport via multivesicular body sorting pathway. Predicted to act upstream of or within protein transport. Predicted to be located in endosome membrane. Predicted to be active in multivesicular body. Orthologous to human VTA1 (vesicle trafficking 1).

Ensembl:

ensembl_id ENSDART00000180789

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00034798 lncRNA upstream 19514 37256654 ~ 37280782 (+) True XLOC_017511
TCONS_00034796 lncRNA upstream 92923 36925959 ~ 37207373 (+) False XLOC_017510
TCONS_00034797 lncRNA upstream 92923 36925968 ~ 37207373 (+) True XLOC_017510
TCONS_00034794 lncRNA upstream 230486 36925954 ~ 37069810 (+) False XLOC_017510
TCONS_00034809 lncRNA downstream 115510 37495088 ~ 37578161 (+) False XLOC_017515
TCONS_00036639 lncRNA downstream 115521 37495099 ~ 37578161 (+) False XLOC_017515
TCONS_00034808 lncRNA downstream 115579 37495157 ~ 37605125 (+) False XLOC_017515
TCONS_00036640 lncRNA downstream 195542 37575120 ~ 37578161 (+) True XLOC_017515
TCONS_00034813 lncRNA downstream 381418 37760996 ~ 37764652 (+) True XLOC_017517
TCONS_00034801 mRNA upstream 2022 37295006 ~ 37298274 (+) True XLOC_017512
TCONS_00034799 mRNA upstream 2944 37294112 ~ 37297352 (+) False XLOC_017512
TCONS_00034800 mRNA upstream 3138 37294191 ~ 37297158 (+) False XLOC_017512
TCONS_00034789 mRNA upstream 461222 36820965 ~ 36839074 (+) False XLOC_017507
TCONS_00034790 mRNA upstream 461249 36821005 ~ 36839047 (+) True XLOC_017507
TCONS_00034804 mRNA downstream 3456 37383034 ~ 37413967 (+) False XLOC_017514
TCONS_00034805 mRNA downstream 3456 37383034 ~ 37469640 (+) False XLOC_017514
TCONS_00034806 mRNA downstream 13556 37393134 ~ 37463309 (+) False XLOC_017514
TCONS_00034807 mRNA downstream 78064 37457642 ~ 37469640 (+) True XLOC_017514
TCONS_00034810 mRNA downstream 281651 37661229 ~ 37736703 (+) False XLOC_017516
TCONS_00034779 other upstream 1020132 36280048 ~ 36280164 (+) True XLOC_017499
TCONS_00034762 other upstream 1877469 35422698 ~ 35422827 (+) True XLOC_017490
TCONS_00034760 other upstream 1917679 35382438 ~ 35382617 (+) False XLOC_017489
TCONS_00034756 other upstream 2011325 35279996 ~ 35288971 (+) False XLOC_017488
TCONS_00034743 other upstream 2236315 35062806 ~ 35063981 (+) True XLOC_017485
TCONS_00034815 other downstream 441412 37820990 ~ 37826136 (+) False XLOC_017519
TCONS_00034825 other downstream 734219 38113797 ~ 38119890 (+) True XLOC_017523
TCONS_00034845 other downstream 1241088 38620666 ~ 38648890 (+) False XLOC_017535
TCONS_00034847 other downstream 1241156 38620734 ~ 38633460 (+) True XLOC_017535
TCONS_00034852 other downstream 1395394 38774972 ~ 38775087 (+) True XLOC_017538

Expression Profile

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