RNA id: TCONS_00036640


Basic Information

Item Value
RNA id TCONS_00036640
length 3042
lncRNA type intronic
GC content 0.46
exon number 1
gene id XLOC_017515
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 37495088 ~ 37605125 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAATGGAATAGATTAAATTAAGGGGTCATATTGGGAACCTCCATCCAAGTCCTTAGTTAACGTTCACAAATCCAGAAAACCAAGATTTTGGGCTAATCAAATAATGGCAAGCAGAAAAGAATGCAGTGCCCCAAAGCTGGACACGATTACATCCTGTCCCATTGCCAAAACAGAGCAATTGATGAAGCGGGGTCTGTATCGAGTTGTTGTGCACAAGGGTCTGCTGTAATCCCGTGAGTGCAGCGGTGGCAGACTAACATCGCATTACGCTCACGTTCATAGCCGGACAGAGCCCCCACTCCTCTCAGTAATTGCTCTCTTTCACGCTGACAGGTCAAAAGGATCTACCGTGGCAGACTTCCCTCCATTGACACACTTGTTCGGAACCCAAGGGAGAAAGTGTGGAttccaaacaaacaacaaaccattTACACAAAGCAATCCATACACAAGAATTGCTCAATTCCTTGACGCACGTCAAAGAGGGCATTTTCCGAACGCCGCTACAGGGACTCATCTCCGAACTACAGTAAAGCAGACAAATCCGGAGTGTGAAGTATTTGTGAATGGAAAATGCTTTAGCACGCTTGGCAGGGAGGATCGTTCCACTGCTTATCAGACAGACTATTACAATTCTTCCTCTCTGCACAAGCAGACACACAACAGTAGGAGGAGGACGGAAGAAAACAAGGAGGATATGCTCTTTTGACCTGCTTCTCAAGGTCGCTGTTGAAGAGATTCAGCATGGTACATGCTAGGTATATGCATAGTGTTTGAAGAAATCCATGCATCTGTAAACTAGGGCTGGGATACATGTGCCCATGACATTCGCCGGGTGTTCCCCTGCGTTATCGCTGGAGCCTTCCCTCACATAATGAATTATGCCATGCTGATAAAGCAGACAGCTGTGTTGGGGGGGCGAGCGGGGGGTTGCATACACAGAGACAGATGAGACGCATTGTGCAAACaagcattttttaataattcccaGTGCAACTGATGGATGATGTGAGGCATGTGAACTCAGTGGGGAATTTGGTGGGGGTATGTGAGGGGTGTCCCTGACATTCCTCTCTGCACAGACTGCGAGGATGCATTGGTATCTATGGAAGTCAAACAGCTATGTACCATCCATGCCGTAACAACAAGTGTGAGAATAAGCACAGGAGAGAACAATGAAAGTAAAGGACATGCTCAGGAACAAGATTCCTCACCAACGCAAGGCTTTAATCGCAGTGTTAATATTACTGCAACATGCAAGCTGTGCAAAGGAATAGAGCAAGTAGAGACTCTGTCACTGACAGCTTGCTGCATCCCACGGATAAACAGCTAACACACGCTCCTCCGTTCCCTTTCCAGTCCTCACGGTTCACATCATCACCCCCTTcagtttacaaacacacacacggggATATCACCTCTCCGATCAACGCTAGATGCTCTGGTAGAGACACAACACAACAAGCCGGAAAAAAAATGGATTTGTGAACCAACCTGGCTTTTCAAGGTCCTCAGTCAACCACAACATTCCGCCGATCTCAAATTCCCCTTGTCCATTCTAGGAGGTCGGTAATAAAACGACAGCCAGCCCCAGCCGAAACTCCCATCAATCAGAAGGCTCTCGCTGATAGAGCGTATACTAGGAGACCTACTGATGTAAGCTAGTCACCAGAGAAAATACCCAGTCGTGACGCATATCCAGGAACAAAAATAGCTCTGGGGCCCCAAGAGGGATTATACAACAGACTACGCTGAGAGGTACTTTTGCAGTGCCTGCTCTTCTgggctgtttttgtgctttatAAGTTGCAAAAAAAGCTGGACGTGAACACAAATAGATGGAACAAAGTACTTCAGACAAATCACAGACCCCCCGTTTGCACACTCgtttgtgtttgcatgcagcaacaCTTACGTCTTATCAGGCAGCATTTAAATTACAGTCTGGCCTCTGTGTCTTTGACCCGGGAATTGTCCATAGAGCGTGGTGTATAACTTCATGGTATCACCACTCACCCCTCCCTCTGCCACCTCCCGCAGGGCTATAAATAGCTCACCAGGCTATTTCTTACAAAATCCCTTTATAGATGTGCTTTCACCGATCACTCTCGGCCAGGCCCAGACACTGATATGATTATCGTTTAGATCGCGGCATGTACTTGTGCATCTGTGCTAGCGCGCATGCATTAAGCAAAGGGTTATCAGACAAGAACAGAACAAATGGTGACATTGCACAGGTGTGCAGTGTGACAATCCTGAAGATTTTGCAGAGGAACCGGCTGCAGAGCGGCCACCCCTTTCACCGCAGGGAACATTAATTCAAACTTATGCTAATATATTTACCTCCGCCACACTGTGTCATAAGTGACAGCAATGCAGCCCTTTTGAGGGTCACCTGAATGAGCTGTCAGCTAAAGAGTTATGACCACATTGGCCCACAGCTGTGGCGCTGTTCCAGCGGGCTTTTACTCAACCTGCAAGATGACATCAAGCTGTCAGGAGTCACCATGATAACGACCATCCCGGTTATCCCAAAGATGAATCAGTTAATCACATCTGCGAGCTAAACATGCCCAGCTATCCAGCAGACTTTTGCCCTTACCACAGAATCCAATTTACGCAGCTAAATATATTTGACCAGGTCTGACCTCTAGAGAGCATCTCTGTGACTAAACGACAATCGGGCCTACCGGGAGCCAGGATCCCTTGTGACATTGCCCACTCAGAAATAcagggaagtaaaaaaaaaaaaacactaaaaagcaCTAAAAACAATTCCCTGGGGGTTCTCACTCACTGTCTGAACAAGTCCTTCTGTAAACATCTCTGCTGGTTTAGTTAACGAtaataaaatgtgttgaattgtTTTTGATAGACTCTGATTTGCTTTGTATTATTCAGTGCCACTGTTGGTCAATTAAATGGGATAattcatgcaaaaatgaaaatgaccttattattaaaggtgcagtatgtaagtttgccacccagtggttgaactaggtattgcatacctggatcaaaacaaacacaaatgcaga

Function

GO:

id name namespace
GO:0034587 piRNA metabolic process biological_process
GO:1990511 piRNA biosynthetic process biological_process
GO:0035770 ribonucleoprotein granule cellular_component
GO:0071546 pi-body cellular_component
GO:0036464 cytoplasmic ribonucleoprotein granule cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00034798 lncRNA upstream 294338 37256654 ~ 37280782 (+) True XLOC_017511
TCONS_00034796 lncRNA upstream 367747 36925959 ~ 37207373 (+) False XLOC_017510
TCONS_00034797 lncRNA upstream 367747 36925968 ~ 37207373 (+) True XLOC_017510
TCONS_00034794 lncRNA upstream 505310 36925954 ~ 37069810 (+) False XLOC_017510
TCONS_00034813 lncRNA downstream 182835 37760996 ~ 37764652 (+) True XLOC_017517
TCONS_00036405 lncRNA downstream 257965 37836126 ~ 37842006 (+) False XLOC_017520
TCONS_00036404 lncRNA downstream 257965 37836126 ~ 37842006 (+) True XLOC_017520
TCONS_00034820 lncRNA downstream 288462 37866623 ~ 37884806 (+) False XLOC_017522
TCONS_00036641 lncRNA downstream 549893 38128054 ~ 38138423 (+) False XLOC_017524
TCONS_00034805 mRNA upstream 105480 37383034 ~ 37469640 (+) False XLOC_017514
TCONS_00034807 mRNA upstream 105480 37457642 ~ 37469640 (+) True XLOC_017514
TCONS_00034806 mRNA upstream 111811 37393134 ~ 37463309 (+) False XLOC_017514
TCONS_00034804 mRNA upstream 161153 37383034 ~ 37413967 (+) False XLOC_017514
TCONS_00034803 mRNA upstream 198460 37300699 ~ 37376660 (+) True XLOC_017513
TCONS_00034810 mRNA downstream 83068 37661229 ~ 37736703 (+) False XLOC_017516
TCONS_00034811 mRNA downstream 83386 37661547 ~ 37732901 (+) True XLOC_017516
TCONS_00034812 mRNA downstream 182332 37760493 ~ 37769303 (+) False XLOC_017517
TCONS_00034814 mRNA downstream 216472 37794633 ~ 37800737 (+) True XLOC_017518
TCONS_00034816 mRNA downstream 242831 37820992 ~ 37827060 (+) False XLOC_017519
TCONS_00034779 other upstream 1294956 36280048 ~ 36280164 (+) True XLOC_017499
TCONS_00034762 other upstream 2152293 35422698 ~ 35422827 (+) True XLOC_017490
TCONS_00034760 other upstream 2192503 35382438 ~ 35382617 (+) False XLOC_017489
TCONS_00034756 other upstream 2286149 35279996 ~ 35288971 (+) False XLOC_017488
TCONS_00034743 other upstream 2511139 35062806 ~ 35063981 (+) True XLOC_017485
TCONS_00034815 other downstream 242829 37820990 ~ 37826136 (+) False XLOC_017519
TCONS_00034825 other downstream 535636 38113797 ~ 38119890 (+) True XLOC_017523
TCONS_00034845 other downstream 1042505 38620666 ~ 38648890 (+) False XLOC_017535
TCONS_00034847 other downstream 1042573 38620734 ~ 38633460 (+) True XLOC_017535
TCONS_00034852 other downstream 1196811 38774972 ~ 38775087 (+) True XLOC_017538