RNA id: CI01000029_01297680_01300190.mRNA


Basic Information

Item Value
RNA id CI01000029_01297680_01300190.mRNA
length 518
RNA type mRNA
GC content 0.38
exon number 6
gene id CI01000029_01297680_01300190
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 1297611 ~ 1300246 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTAAAAACAAGGTTATTTTTGAAGAGAAACAGAAACGTGCTCAAAATATTTTATATACACTAAAATTATGGCTAGAGAGTTCATTGACTGTCATTGTCACCTGTCAGCAAATGAGTTTACACAGGACATAGATGATGTACTTCTGAGAGCAAAAAAGGCTGGAGTGAAAGCTCTTGTGGCAGTTACAGAGGGAGCCAGTGAGTTTGAGAAAGTTATTCAGTTGTCAAAAAACTATCCTGGTTTTGTGTTCCCTTGTTTTGGCATTCATCCCCTTCAAGAGTCAGGGAACGACTTGCACAGTGTCAAGGTTCAGAAGCACAGAGATAATATTGTTGCGGTTGGAGAGATTGGTCTTGACTTTACCCCCTGGTTTGCAAATACTAATCAAGAGCGTGATGAACAGATAAACGTCTTTATAAAACAACTTGAAATATCTAAAGAAATGGATTTACCAGTGTGAGTGGCAACATGACACTTTAATAGAGAGTAACAGGAAATCATACAAGCAGCCCAGAA

Function

GO:

id name namespace
GO:0004518 nuclease activity molecular_function

KEGG:

id description
K03424 tatD; TatD DNase family protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172536 lncRNA upstream 289273 1004177 ~ 1004713 (+) True G151904
TU172387 lncRNA upstream 544832 750049 ~ 750982 (+) True G151759
TU172386 lncRNA upstream 545034 749986 ~ 750982 (+) False G151759
TU172385 lncRNA upstream 545034 750049 ~ 750982 (+) False G151759
TU172384 lncRNA upstream 627848 669485 ~ 669763 (+) True G151758
TU172620 lncRNA downstream 62705 1362951 ~ 1363894 (+) True G151977
TU172625 lncRNA downstream 144666 1444912 ~ 1445191 (+) True G151982
TU172634 lncRNA downstream 155961 1456207 ~ 1456417 (+) True G151991
TU172639 lncRNA downstream 161758 1462004 ~ 1462313 (+) True G151996
TU172640 lncRNA downstream 164965 1465211 ~ 1465488 (+) True G151997
CI01000029_01284636_01285656.mRNA mRNA upstream 11653 1284636 ~ 1285958 (+) True CI01000029_01284636_01285656
CI01000029_01259557_01263294.mRNA mRNA upstream 34317 1259256 ~ 1263294 (+) True CI01000029_01259557_01263294
CI01000029_01206589_01231131.mRNA mRNA upstream 66453 1204463 ~ 1231158 (+) True CI01000029_01206589_01231131
CI01000029_01165267_01171855.mRNA mRNA upstream 123692 1164854 ~ 1173919 (+) True CI01000029_01165267_01171855
CI01000029_01055143_01086742.mRNA mRNA upstream 209900 1055143 ~ 1087711 (+) True CI01000029_01055143_01086742
CI01000029_01304740_01313262.mRNA mRNA downstream 2080 1302326 ~ 1313265 (+) True CI01000029_01304740_01313262
CI01000029_01318644_01336634.mRNA mRNA downstream 17528 1317774 ~ 1336921 (+) True CI01000029_01318644_01336634
CI01000029_01396098_01435688.mRNA mRNA downstream 95197 1395443 ~ 1436078 (+) True CI01000029_01396098_01435688
CI01000029_01475527_01497973.mRNA mRNA downstream 174684 1474930 ~ 1498068 (+) True CI01000029_01475527_01497973
CI01000029_01526863_01527414.mRNA mRNA downstream 226508 1526754 ~ 1527579 (+) False CI01000029_01526863_01527414
TU172071 other upstream 925689 366580 ~ 371922 (+) False G151495
TU172069 other upstream 925822 366580 ~ 371789 (+) False G151495
TU172068 other upstream 925887 366541 ~ 371724 (+) False G151495
TU172072 other upstream 925887 366580 ~ 371724 (+) False G151495
TU172075 other upstream 925887 366580 ~ 371724 (+) True G151495
TU172657 other downstream 226540 1526786 ~ 1527899 (+) True CI01000029_01526863_01527414
TU173161 other downstream 1461348 2761594 ~ 2762939 (+) True G152451
TU174291 other downstream 2244879 3545125 ~ 3562004 (+) True G153475
TU174646 other downstream 3433343 4733589 ~ 4740107 (+) True G153790
TU175511 other downstream 3970774 5271020 ~ 5271535 (+) True G154587

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00034816 False 1072 mRNA 0.39 10 NC_007131.7 37820992 ~ 37827060 (+)