RNA id: TU172640


Basic Information

Item Value
RNA id TU172640
length 278
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G151997
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 1465211 ~ 1465488 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCACTACTAAATATTCCACGGTCAACTGTTAGTGGTATCATAACAAAGTGGAAGCAATTGGGAACAACAGCAACTCAGCCACGAAGTGGTAGGCCACGTAAAGTCACAGAGCGGGGTCAGTGCATGCTGAGGCGCACAGTGCGCAGAAGTCGCCAACTTTCTGCAGAGTCAATAGCTACAGACCTCCAAACTTCATGTGGTCTTCAGATTAGCTCAAGAACAGTGCGTAGAGAGCTTCATGGAATGGGTTTCCATGGCCAAGCACCTGCATCCACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172639 lncRNA upstream 2898 1462004 ~ 1462313 (+) True G151996
TU172634 lncRNA upstream 8794 1456207 ~ 1456417 (+) True G151991
TU172625 lncRNA upstream 20020 1444912 ~ 1445191 (+) True G151982
TU172620 lncRNA upstream 101317 1362951 ~ 1363894 (+) True G151977
TU172441 lncRNA upstream 120975 865287 ~ 1344236 (+) True G151810
TU172645 lncRNA downstream 7541 1473029 ~ 1473465 (+) True G152002
TU172679 lncRNA downstream 59508 1524996 ~ 1525200 (+) True G152034
TU172656 lncRNA downstream 61298 1572206 ~ 1576440 (+) True G152012
TU172663 lncRNA downstream 193120 1658608 ~ 1658858 (+) True G152018
TU172666 lncRNA downstream 193506 1658994 ~ 1659667 (+) True G152021
CI01000029_01396098_01435688.mRNA mRNA upstream 29133 1395443 ~ 1436078 (+) True CI01000029_01396098_01435688
CI01000029_01318644_01336634.mRNA mRNA upstream 128290 1317774 ~ 1336921 (+) True CI01000029_01318644_01336634
CI01000029_01304740_01313262.mRNA mRNA upstream 151946 1302326 ~ 1313265 (+) True CI01000029_01304740_01313262
CI01000029_01297680_01300190.mRNA mRNA upstream 164965 1297611 ~ 1300246 (+) True CI01000029_01297680_01300190
CI01000029_01284636_01285656.mRNA mRNA upstream 179253 1284636 ~ 1285958 (+) True CI01000029_01284636_01285656
CI01000029_01475527_01497973.mRNA mRNA downstream 9442 1474930 ~ 1498068 (+) True CI01000029_01475527_01497973
CI01000029_01526863_01527414.mRNA mRNA downstream 61266 1526754 ~ 1527579 (+) False CI01000029_01526863_01527414
CI01000029_01533005_01534392.mRNA mRNA downstream 66987 1532475 ~ 1534556 (+) True CI01000029_01533005_01534392
CI01000029_01542500_01557216.mRNA mRNA downstream 76662 1542150 ~ 1558713 (+) True CI01000029_01542500_01557216
CI01000029_01616562_01644867.mRNA mRNA downstream 150947 1616435 ~ 1644880 (+) True CI01000029_01616562_01644867
TU172071 other upstream 1093289 366580 ~ 371922 (+) False G151495
TU172069 other upstream 1093422 366580 ~ 371789 (+) False G151495
TU172068 other upstream 1093487 366541 ~ 371724 (+) False G151495
TU172072 other upstream 1093487 366580 ~ 371724 (+) False G151495
TU172075 other upstream 1093487 366580 ~ 371724 (+) True G151495
TU172657 other downstream 61298 1526786 ~ 1527899 (+) True CI01000029_01526863_01527414
TU173161 other downstream 1296106 2761594 ~ 2762939 (+) True G152451
TU174291 other downstream 2079637 3545125 ~ 3562004 (+) True G153475
TU174646 other downstream 3268101 4733589 ~ 4740107 (+) True G153790
TU175511 other downstream 3805532 5271020 ~ 5271535 (+) True G154587

Expression Profile