G151991


Basic Information

Item Value
gene id G151991
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 1456207 ~ 1456417 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU172634
TGTAAGCTCATGCGCTGCGGTTTCAAAGTGTGTACATGTTTTTGCTGTTCTTGTTGCATTTACACGGCTTTAACCAGCAGATGTCCTCAGCGTGCTATGTTTCCAGCGAATAGCTAGTGCAATCGATCTAATCTAACAGAATTTACCTGAGGAAGTCCATATAGTGGAATAAAAAAAAAAAAACCACCTAGGCTGTGTCCGAAATCGCCCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU172634 True 211 lncRNA 0.43 1 1456207 1456417

Neighbor

gene id symbol gene type direction distance location
CI01000029_01396098_01435688 GALNT14 coding upstream 20129 1395443 ~ 1436078 (+)
CI01000029_01318644_01336634 NA coding upstream 119286 1317774 ~ 1336921 (+)
CI01000029_01304740_01313262 FLVCR1 coding upstream 142942 1302326 ~ 1313265 (+)
CI01000029_01297680_01300190 TATDN3 coding upstream 155961 1297611 ~ 1300246 (+)
CI01000029_01284636_01285656 NA coding upstream 170249 1284636 ~ 1285958 (+)
CI01000029_01475527_01497973 EHD3 coding downstream 18513 1474930 ~ 1498068 (+)
CI01000029_01526863_01527414 NA coding downstream 70337 1526754 ~ 1527899 (+)
CI01000029_01533005_01534392 NA coding downstream 76058 1532475 ~ 1534556 (+)
CI01000029_01542500_01557216 C1ORF95, STUM coding downstream 85733 1542150 ~ 1558713 (+)
CI01000029_01616562_01644867 ADCK3, COQ8A coding downstream 160018 1616435 ~ 1644880 (+)
G151982 NA non-coding upstream 11016 1444912 ~ 1445191 (+)
G151977 NA non-coding upstream 92313 1362951 ~ 1363894 (+)
G151810 NA non-coding upstream 111971 865287 ~ 1344236 (+)
G151904 NA non-coding upstream 447869 1004177 ~ 1004713 (+)
CI01000029_00751587_00751771 ABRACL, CF115 non-coding upstream 703428 751587 ~ 752779 (+)
G151996 NA non-coding downstream 5587 1462004 ~ 1462313 (+)
G151997 NA non-coding downstream 8794 1465211 ~ 1465488 (+)
G152002 NA non-coding downstream 16612 1473029 ~ 1473465 (+)
G152034 NA non-coding downstream 68579 1524996 ~ 1525200 (+)
G151495 NA other upstream 1084285 366541 ~ 371922 (+)
G151415 NA other upstream 1230962 170521 ~ 225245 (+)
G152451 NA other downstream 1305177 2761594 ~ 2762939 (+)
G153475 NA other downstream 2088708 3545125 ~ 3562004 (+)
G153790 NA other downstream 3277172 4733589 ~ 4740107 (+)
G154587 NA other downstream 3814603 5271020 ~ 5271535 (+)

Expression


Co-expression Network