XLOC_017527 (ccl38a.5)


Basic Information

Item Value
gene id XLOC_017527
gene name ccl38a.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 38279523 ~ 38280392 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034830
TCTGATCAACAAACGCAACCATGAGGCCGTCCTGCATCTCCATCGTCTGTCTGGTGCTCTTCGCTTTCTGCTCAGTTGATGGAAGTGATTTGTCCCAGAGTCCCGATAAGtgctgcttttctttttctaatacAAGAATTCCAGTAAAGCAGGTTGAGAGTTATCATACGACGCATCTTCTCTGCAGTGGTAATGGTGTTATtTTCATCACAAAGGCTCAAAGGGAGATCTGCACTAACCCGACTGAGAAATGGGTTCAGAGACTGATGAAGTTGGTGGACAATCAAAACATGAAGCAGATGACCGAGGCCGGCTCTGGTGACAGCGCCTAAGATGGGAACAGTCCTCTCTTTACTGAATCGTTTCTCAACTGTATTTAAGCTTACTTTTATATGCACCTGCATTATACTGTTACTCTGCTTTGAACATtgtatatctatttatttatgcaaaGCATATTCATTCTAGAACTGTAATGTGAATCTGTCTGTATTGTTACATATCTATATGAAAATAAAGAACATGCAGTATA

Function

symbol description
ccl38a.5 Predicted to enable CCR chemokine receptor binding activity and chemokine activity. Predicted to be involved in several processes, including cellular response to cytokine stimulus; leukocyte chemotaxis; and positive regulation of ERK1 and ERK2 cascade. Predicted to act upstream of or within chemotaxis; immune response; and response to virus. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Human ortholog(s) of this gene implicated in asthma; human immunodeficiency virus infectious disease; hyperglycemia; and multiple sclerosis. Orthologous to several human genes including CCL11 (C-C motif chemokine ligand 11); CCL13 (C-C motif chemokine ligand 13); and CCL7 (C-C motif chemokine ligand 7).

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0002548 monocyte chemotaxis biological_process
GO:0006935 chemotaxis biological_process
GO:0006954 inflammatory response biological_process
GO:0006955 immune response biological_process
GO:0071346 cellular response to interferon-gamma biological_process
GO:0071347 cellular response to interleukin-1 biological_process
GO:0071356 cellular response to tumor necrosis factor biological_process
GO:0048247 lymphocyte chemotaxis biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0070374 positive regulation of ERK1 and ERK2 cascade biological_process
GO:0030593 neutrophil chemotaxis biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005125 cytokine activity molecular_function
GO:0048020 CCR chemokine receptor binding molecular_function
GO:0008009 chemokine activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041014-167 Predicted to enable CCR chemokine receptor binding activity and chemokine activity. Predicted to be involved in several processes, including cellular response to cytokine stimulus; leukocyte chemotaxis; and positive regulation of ERK1 and ERK2 cascade. Predicted to act upstream of or within chemotaxis; immune response; and response to virus. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Human ortholog(s) of this gene implicated in asthma; human immunodeficiency virus infectious disease; hyperglycemia; and multiple sclerosis. Orthologous to several human genes including CCL11 (C-C motif chemokine ligand 11); CCL13 (C-C motif chemokine ligand 13); and CCL7 (C-C motif chemokine ligand 7).

Ensembl:

ensembl_id ENSDARG00000041835

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034830 True 532 mRNA 0.41 3 38279523 38280392

Neighbor

gene id symbol gene type direction distance location
XLOC_017525 ehd3 coding upstream 37664 38201644 ~ 38241859 (+)
XLOC_017524 NA coding upstream 141100 38128054 ~ 38138423 (+)
XLOC_017523 galnt14 coding upstream 159633 38031439 ~ 38119890 (+)
XLOC_017522 vash2 coding upstream 363001 37866171 ~ 37916522 (+)
XLOC_017521 flvcr1 coding upstream 416988 37844035 ~ 37862535 (+)
XLOC_017528 ccl38a.4 coding downstream 5279 38285671 ~ 38286553 (+)
XLOC_017529 stum coding downstream 42052 38322444 ~ 38359333 (+)
XLOC_017530 NA coding downstream 93280 38373672 ~ 38447247 (+)
XLOC_017531 coq8aa coding downstream 177692 38458084 ~ 38519126 (+)
XLOC_017532 znf512 coding downstream 244435 38524827 ~ 38538994 (+)
XLOC_017520 NA non-coding upstream 437517 37836126 ~ 37842006 (+)
XLOC_017515 NA non-coding upstream 674398 37495088 ~ 37605125 (+)
XLOC_017511 BX855623.1 non-coding upstream 998741 37256654 ~ 37280782 (+)
XLOC_017510 NA non-coding upstream 1072150 36925790 ~ 37207373 (+)
XLOC_017534 NA non-coding downstream 310116 38590508 ~ 38598879 (+)
XLOC_017538 BX511178.1 non-coding downstream 494580 38774972 ~ 38775087 (+)
XLOC_017541 NA non-coding downstream 767667 39048059 ~ 39195117 (+)
XLOC_017544 AL845306.1 non-coding downstream 1051577 39331969 ~ 39332092 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G152012 NA non-coding CI01000029 null 1572206 ~ 1576440 (+)
tiger barb (Puntius tetrazona) G116865 NA non-coding NC_056714.1 CM032083.1 27952568 ~ 27954707 (-)