XLOC_017528 (ccl38a.4)


Basic Information

Item Value
gene id XLOC_017528
gene name ccl38a.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 38285671 ~ 38286553 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034831
CTATAGGTTGTGTTGTGGAAAGTACAGACTCATCCCTATATAAAGCCGATAACATCAGTGGGGTGATTATCTTCAGCCGATCAGCCACCGATAAACCTCCAGATTTGATAATCGACTGACCACAAATACAACCAACCATGAGGCAGTCCTGCATCTTCATCGCCTGTCTGGTGCTCGTCGCATTCTGCTCAGTTGATGGAAGTGATTTCAGCCAAAATCCAGACAAGTGCTGCTTTTCGTTTTCCACTATAAAGATCCCAGTTAAGCAGGTTCAGAGTTATCATACTACACATTTTCAATGTCAGAAGAACGGGATCATTTTTGTGACAGAACAGAAGGAGATCTGCGCTGACCCGACTGAGAGATGGGTTCAGAGACTGATGAATCTGGTGGATGCTCGCCTGGTGAAAGACACAGAGGCCAGCTCTAATGGCAGCCCCTAAGATGAGAACGCTCTGCTGGTTTCATACTATTGCATTGAACAGTTTCCAGACTGTTTTTAAGCTTTGAAATAACTGTGAAGTGCACATTAACAATACTGTTAATTATATTTCAAGACATGCTACCTGTTTAAGCTAGAATTCAAACCTGAATCTGAACCTGTCTGAATACTTtaatattatacataaataaagaACTTTAA

Function

symbol description
ccl38a.4 Predicted to enable CCR chemokine receptor binding activity and chemokine activity. Predicted to be involved in several processes, including cellular response to cytokine stimulus; leukocyte chemotaxis; and positive regulation of ERK1 and ERK2 cascade. Predicted to act upstream of or within chemotaxis; immune response; and response to virus. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Human ortholog(s) of this gene implicated in multiple sclerosis. Orthologous to human CCL13 (C-C motif chemokine ligand 13).

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0002548 monocyte chemotaxis biological_process
GO:0006935 chemotaxis biological_process
GO:0006954 inflammatory response biological_process
GO:0006955 immune response biological_process
GO:0071346 cellular response to interferon-gamma biological_process
GO:0071347 cellular response to interleukin-1 biological_process
GO:0071356 cellular response to tumor necrosis factor biological_process
GO:0048247 lymphocyte chemotaxis biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0070374 positive regulation of ERK1 and ERK2 cascade biological_process
GO:0030593 neutrophil chemotaxis biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005125 cytokine activity molecular_function
GO:0048020 CCR chemokine receptor binding molecular_function
GO:0008009 chemokine activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041014-163 Predicted to enable CCR chemokine receptor binding activity and chemokine activity. Predicted to be involved in several processes, including cellular response to cytokine stimulus; leukocyte chemotaxis; and positive regulation of ERK1 and ERK2 cascade. Predicted to act upstream of or within chemotaxis; immune response; and response to virus. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Human ortholog(s) of this gene implicated in multiple sclerosis. Orthologous to human CCL13 (C-C motif chemokine ligand 13).

Ensembl:

ensembl_id ENSDARG00000041917

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034831 True 643 mRNA 0.41 3 38285671 38286553

Neighbor

gene id symbol gene type direction distance location
XLOC_017527 ccl38a.5 coding upstream 5279 38279523 ~ 38280392 (+)
XLOC_017525 ehd3 coding upstream 43812 38201644 ~ 38241859 (+)
XLOC_017524 NA coding upstream 147248 38128054 ~ 38138423 (+)
XLOC_017523 galnt14 coding upstream 165781 38031439 ~ 38119890 (+)
XLOC_017522 vash2 coding upstream 369149 37866171 ~ 37916522 (+)
XLOC_017529 stum coding downstream 35891 38322444 ~ 38359333 (+)
XLOC_017530 NA coding downstream 87119 38373672 ~ 38447247 (+)
XLOC_017531 coq8aa coding downstream 171531 38458084 ~ 38519126 (+)
XLOC_017532 znf512 coding downstream 238274 38524827 ~ 38538994 (+)
XLOC_017533 gtf3c2 coding downstream 256761 38543314 ~ 38584161 (+)
XLOC_017520 NA non-coding upstream 443665 37836126 ~ 37842006 (+)
XLOC_017515 NA non-coding upstream 680546 37495088 ~ 37605125 (+)
XLOC_017511 BX855623.1 non-coding upstream 1004889 37256654 ~ 37280782 (+)
XLOC_017510 NA non-coding upstream 1078298 36925790 ~ 37207373 (+)
XLOC_017534 NA non-coding downstream 303955 38590508 ~ 38598879 (+)
XLOC_017538 BX511178.1 non-coding downstream 488419 38774972 ~ 38775087 (+)
XLOC_017541 NA non-coding downstream 761506 39048059 ~ 39195117 (+)
XLOC_017544 AL845306.1 non-coding downstream 1045416 39331969 ~ 39332092 (+)

Expression


Co-expression Network