CI01000029_02054840_02058175


Basic Information

Item Value
gene id CI01000029_02054840_02058175
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 2054493 ~ 2058386 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_02054840_02058175.mRNA
ACAGTCTGTAGGAGAGTGTCTCTCACAAAATGCATTATTTAAAGTGTGGTTTTTGCAATTGTTCATTGTCATAAACTTGCTGAGTCACTTTCACCACAGCTTAATTAAAAAAAAAAAAAAAAAAAAAAAAGCTTCACTACTGAGTGACGCACTATTTTCTGACCACTGTGTTAAACAGCTTCTGGAATCCGGTCACAAGCAGCCACCAAAGATGAAGGTCTCATGGTCTCTGCTGGGGCTTTCTTTACTCTACCTGTCCACAGAGTGTCTATTACCCCCAACTAAAGAGGAGCTCAATCAGATATCACTGCTTGGTGAAAAGTACCTGGATAAGCAGATTGAAAATGCCATCACTGGGGTGAAGGAGATGAAGACTGTGATGGAGCGATCAGGAGAGGATCACAAAAGGTTCCTGTCTGAACTGGAGAAAACCAAGCAACAGAAAGAGACTGCTCTGAAGATGGCTAAGGAGATGGAGGAGAAGCTAAGTGAGGAACAGAGCGTGTGCAATGAAACTGTGCAGGCTCTGTGGGAGGAGTGCAAGCCCTGCTTGAGAAAAACCTGCGTTAAGTATTACTCCCGCACCTGCAGCAGTGGAGCCGGCCTGGTGGGACGACAGCTTGAGGAGGTTTTGAACAGGACCTCTCCCATCTCCATTTGGATAAATGGACAGAACATTGAGAACCTGGTGGATGAGGACAAGCAGCAGACCAGACACTTCCAGGACCTGGAGGAACGGTACACAGAGGTTGCCGATGGAGTAGACAACATCTTCATGGACAGCATGAAGGTGTTTGACCACATGCATGCCTTCCACCAGCCCGGCCTCTTCCCCAGCCCATTCCGTATGCCCAGCGTGTTCGGAAGACAGGATACAATGGGCGGCCGGGCTGCTCGTATCTACAGGTCCCCCATGCAGGACCCAGAGTTCCACAGCTTCCACAGCTTCCACAGCATGTTTCGCCCCATGATGGAGATGGCAAGAAACATGTTTGAGTCATTCGGGCCCTACATGGGAAGTGATATGGATTTCTCCACTGAAGATGGGAAAGTAAACGAGGATGTTATTATAACTAAACCATTTGGAAATGATAAGATGACTTGCAGGGAAATTCGCCGCAATTCGGCTGGCTGCATTAAACTAAAGGATGAGTGTGAGAAATGTAAGGAGATCCAGCATATTGACTGTTCTGGAAAGAGGCCCCTGGAAGGCCCCCTGAAGGAGGAGCTGGAGAGGGCTCTCGCCAGGGCTGAGAGATTCACCCAGGAGTACAACAACCTGCTAAAGCGATTCGAAGAGAAGATGTTCAACACCTCTAGTGTGCTGGACCTGTTCAACAAGCAATTCGGTTGGGTGTCCTCTCTAGCTAACCATACCAAAAATGAGGATGGCTTCTTTAAAATACAGGCAGTAGGTCCTAATTATGTGATTCAGACTACTGTAACCCCTTTCACTATGCAGAACACTCAATCACCAACATTTTATGTGCAGGTGATATCAAAAGGCTCGGATAATGTAGAGAATCCAGCTGACACTAAAGTGTCAGTCAAACTGTTTGATGGGCCAGATATGAGCTTCACCGTGCCAGGAGAGATTCCCTGGAGCGACCCAAAATTCTCCGAGGTGGTGGCACAGGAGGCTTTGGATCGTTACAAACAGAACACTGTGTGAGTCTTCACACCAATCTTTTCCATTTTGTTTCATTCTAAACCTTATATGATTACGTAATTATGAAAAACCATTAATGCTTTCTTCTCCAGGGTCATAAACTAAACGTTTTGGAGGGTGGGTACTTCCAGTGAAGAAGATATTCCCTTTTCTCAGAAAAGCACTCGAGATGATTACAAATTAGAACTAAATGAATATTGACAGATGTTGTACTCATGTAGCTGGATTTCTTTTGTCTAGCATTATTCCTGCTGTCTCATACTATTTAACATTCAGAGACCCTACAGAGATTGTATAGAATAAGTGCTTATGAAAACGTAATCAACTGTACATTGTCAAATATCAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_02054840_02058175.mRNA True 2019 mRNA 0.45 6 2054493 2058386

Neighbor

gene id symbol gene type direction distance location
CI01000029_02029449_02036156 CYP39A1 coding downstream 18337 2029426 ~ 2036156 (-)
CI01000029_01943164_01970772 RCAN2 coding downstream 83488 1942645 ~ 1971005 (-)
CI01000029_01812895_01814632 NA coding downstream 239861 1812805 ~ 1814632 (-)
CI01000029_01788875_01811689 CAD coding downstream 242804 1788789 ~ 1811689 (-)
CI01000029_01783528_01785599 DNAJC5G, DNAJC5GA coding downstream 268894 1783463 ~ 1785599 (-)
CI01000029_02099152_02101364 CCDC25 coding upstream 40626 2099012 ~ 2102007 (-)
CI01000029_02107558_02110456 PBK coding upstream 48944 2107330 ~ 2111349 (-)
CI01000029_02114824_02116942 SLC35D3 coding upstream 56206 2114592 ~ 2119568 (-)
CI01000029_02125408_02143865 PEX7 coding upstream 66936 2125322 ~ 2143865 (-)
CI01000029_02145528_02148347 HEY2 coding upstream 86064 2144450 ~ 2149108 (-)
G153085 NA non-coding downstream 116929 1934941 ~ 1937564 (-)
G152748 NA non-coding downstream 200885 1853081 ~ 1853608 (-)
G152742 NA non-coding downstream 203466 1837096 ~ 1851027 (-)
G152775 NA non-coding downstream 394988 1658989 ~ 1659505 (-)
G152989 NA non-coding downstream 434199 1619702 ~ 1620294 (-)
G153102 NA non-coding upstream 21686 2080072 ~ 2080284 (-)
G153105 NA non-coding upstream 37449 2095835 ~ 2096082 (-)
G152762 NA non-coding upstream 55038 2113424 ~ 2114309 (-)
G153134 NA non-coding upstream 167331 2225717 ~ 2227563 (-)
G153161 NA non-coding upstream 385277 2443663 ~ 2444082 (-)
CI01000029_01293143_01293964 BATF3 other downstream 760370 1292249 ~ 1294123 (-)
CI01000029_02589994_02592379 NA other upstream 533780 2587549 ~ 2592379 (-)
G153891 NA other upstream 1190391 3248777 ~ 3286554 (-)
CI01000029_03698769_03707177 NA other upstream 1647837 3698572 ~ 3707883 (-)
CI01000029_04460778_04463540 FKBP1B other upstream 2401957 4460159 ~ 4463540 (-)
G154415 NA other upstream 2927722 4986108 ~ 4990990 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018292 clu coding NC_007131.7 CM002904.2 39260475 ~ 39273987 (-)