CI01000029_02114824_02116942 (SLC35D3)


Basic Information

Item Value
gene id CI01000029_02114824_02116942
gene name SLC35D3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 2114592 ~ 2119568 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_02114824_02116942.mRNA
ATTGCATCGGGAGTGCAGTACGGAGGACGGGGAATCTCACGCTGTCACTGAGTGTAAAAACCGCCTGCTTTCGGGAGTGTGATGTTATTATAGTGTTTATAATAAGTGTAAAATCAAACTAAGTGAGTTTACCTTAAACAGTGAGTGCCTTATTGTTGTCTAAAGCTCATTGGTAAATTATGTAGTAATTATTGTTGTTCGCTACTAGATTGTTTCCAGTTTGTTAAACTGATATTAATAAATCAATGCAATCTGTCATTATCAATTGAGTCAGATGATGAGCCTGGTTCATTTAAATCAAATTAATATTTTTAATATTGCCTCCAACACTGTGTTCAGTGTTTTTTTAAATTGTAGCAGACAAATTGATGACTATTATATCAAAGTACCTAGTGAATATTGTGTGTTTTATTTCACTTGGGGCAGAATATAGGAATAAAAATGCCAAGTATACAAACATTTAGAGGTGTATAACAGTAATATAGTGTTAAGAAAAAAGTACTGTAGCGGTAACATGGTACAGCGATGTTATCAAGTAATACTATGGTTCTTTGGTATATACTGTAGAATTGAGAACGAGTATCATATTCATGTAGCATTTTATCAAGTCTCAAGTCTAGTTTATTTATAGAGCCCTTTACAACTACAGACCAAAAAACATAAAATATCAAACATAATAAAATAAAAGCTCCAAATATCAACAGTTAAAAGCCATAGAAAACAAGTTTTCATTTGAGATTTAAATATTTCAATGAAGGAAGCGCATCTGATGTCAAACGGAATGACATTCCACAACCTCGGGCCGACAACAGAAAAAGCCCAATCCCCTTTAGTCTTCAAGTGAGTTTTGGGCATCGTCAATAAAAGAACGTTTACAGAACGTTAGTTTTTGGTTCCCAGAACGTTATTCTAACATTAATCTAACATTTTGGAAACGTTAGTTTTTGGTTTGTATAACGTTATTCTAACGTTCTAATAACGTTAGTTTTTGGTTCCCAGAACGTTAATCTAACATTAATCTAACGTTCTGGGAACGTTAGTTTTTGGTTTGTATAACGTTATTCTAACATTCTCATAACATTATTCTAACATCTACAGAACAATAGTTTTTGGTTCCCAGCATGTTAATTTTTTTGTTCCTAGAACGTTATTCTAACATTAATCTAACGTTCGGGGAACGTTAGTTTTTGGTTCCCAGAACGTTATTCTAACATTAATCTAACGTTCTGGGAACGTTAGTTTTGGTTTGTGTAACATTATTATAACGTTTACAGAACGTTAGTTTTTGGTTCCCAGAATGTTATTCTAACATTACTCTAACATTTACAGAACGTTAGTTTTTGGTTCCCAGAACGTTATTCTAACGTTAATCTAACATTCCCAGAACGTTTGTTTTTGGTTTGTATAATGTTATTCTAATGTTCTCATAATGTTAAAAATAACCATCCTGCAAAGTTCTGGGAAAGTTATTTTATGGTTGCAAAAAATAAAACCTAAAAAGAACGTTCCCAGAACGTTATTTTTTGGTTCTCAAAAAAAAAAAAAAAACTAACTAACGTTAGGAGAACGTTGTGTTTGGTTGGTATATATTTATATACTAGCAGCAGTACTTGTATAGTGGCTGTCAAGGATTTTCCAATGGCTTGTTGTTATCCAAATGACCTTGAATCGCCAGAACTGATATTAAGCCTTTGAAATTGTGAACAGGAAGTTTTGAAGCTCAGACTGTGTCTTCAGATAATGCTTCCATGTTCCATAGAGCTTAAGCTGGTGTGCAAATTATACAATCCCTTTCGGGGAGTTTGTTTGACTATACAGAAAGTTTTAGACGTGCAATCTGTTCAAGTATAGTCAAACAACCTTTCTTGAACTAAAAACAAACAAAACACACACACACACACAAAATAAAAACACTTATTTAACCCACTTAATAAAGCTGGGTTAAATAAGAGAGACATCCGAAATACTGAAAGCTCCAGTCAGGGTCTGTATTACAGAAACATCCTAGTTTAGAATCCTATCCCATGCATCTGTTTAGTAACCATGGTAATTTCACTTAGGAAATAAAACTTTTTCAAATTTAGTCAAGAATTTAGATAGGAAGATTCTGTAATACACTCTCAGGAACGGTTCCCTGTTCTAACGAAAAATGTTCGAGCGGCTTACTGTTGCTATGGTTATGTCCTCAGGCGAACGCGATATCTGTTCGCGAGCGTCTATTTTAGTAATCTTTTACAGTGACTGAAATGTTTGGAAAAACCCAGGTGAAACGCTTTAGTAAGGTGAAAATTAATGCCTTAATACTTCGCAGTCCGCGCATTGGTTTAGGCTACAGATTGTATTGTTGTTTACAACTGTGAACTACCTCGAAGGAGAAATAAAAGTGTAAAGTACATCAAAGTAAATGTATTGGCTGCAGTTGACTCTGTCAATTCAATCATTGTACAGAGAAGGAGACCGTCGGAACTGCAGCGCGTGTCGCATTAATTCAGCAGCGCTCAGCGCGAGCTCGTGTGTTGTGTGAATTACGCGCGAGAGGAGAGTGGACGTGAATATTCAGCAGTGGACTCAGAGCTCAGTGCGTAATACGGAGACGCCGGGAACCCCCCAGTCTACGAAGGAAGACATGGAAGTTTGCAAAGGACGTTTGCTGGGCGTTTCGGTGGCCGTTGCTCATGGATTCTTTTCGGGGTCGCTAAATATTTTGTTAAAATTCCTCATTACGACCTATAGCTTCACGTATCTGACTTTAATTCAGTGTCTGACCAGCGGCACTGCGGCTCTCACATTAGAGGTGCTGAGGAGACTGGGCAAAATAGATATACCACCCTTCAGCCTCCAGTTAGTGAAAGTTTTTGCGAGTGTCTGTATTTTGTCAACTTTACAGTCCACGTTAACCCTCTGGTCTCTCAGAGGACTGAGTTTACCCATGTATGTTGTGTTTAAGCGATGCTTGCCTTTGGTAACGTTAGGGATTGGAGTGTGTGTGCTGAAGAATGGGATCCCATCACCCGGGGTGATAACAGCAGTTCTCATCACAACTGGAGGAGCAGCACTGGCTGGTGCTGGAGATCTAACAGGTGACCCTTTTGGCTACGTGACTGGCTTTTTAGCTGTGATTGTCCACGCTTCCTATTTGGTACTCATCCAAAAAGTGAGTGCAGACAGTGATTATGGGCCACTCACAGCCCAGTACACCATTGCAGTGGTGGCTTCTCCTGTTCTCTTCATCTGTTCCATTGTAAGCATGGATGCCATTGAGATGTGGACATATGAAGGTTGGAAGAACCCGTATATCACAGGAATCTTCTGTACCTGCATCCTCATTGGCTGTGCGATGAACTTTACCACACTGCACTGCACCTATATCAACTCGGCTGTCACCACCAGTTTTGTGGGGGTGGTCAAGAGTATAGCTACTATCACTGTGGGCATGCTGGCATTCAGTGACGTGATGCCAACTAAACTGTTCGTGGCAGGCGTGGTAGTCAACACTATCGGCTCCATCACCTACTGTGCGGTGAAGTATCATGAAGCCAAAAAGAAGCTGGCCTACCAGGATATGGATGAGTCCACTAAAAATGAAGAACTTCCAGGAGAACCTTATGTGGAACCTGCCAAGCCTGATGGAGATACGGAAACTGTTCCAAATGGTCTGGAGAATGTTCCCAATGGCAGCCTGGTGGCATCAGCTGATGGCTATGACCAGGGTCCCATTCGTGAGAATAAAGTGGCAGAGTCCATAGAATTAGATAGACCGGGGATCCCATCAGAGGATCCTACGAGACAATCTCTGAGCGACAGTTATGTAGGGGTCTGGAGATCCATTCGCACCTTAAAGTTCCTTAAGAAAGACCCTTTACTTGATAATATGGAGGTCCAAAGTCCTTGATGATTGGTTTCCCGCTCGACAGAAGTGCATGTTAATTGTTGAAGTATTGTTGAAAACTGATGGTGTGAACAATGTCTGCCTTTTTCTCTCCAGAACATGATTTTATGAAAAACTTGTATTTTTTTATAAAATAAAAAAAGGTATAGTCTGTTTGTACATTAGAGGGAGTATAATCACATGACATTGAGGAATCCCCTGTAACTGATGTGCCAATTTACTGACTTAAAATAAA

Function

symbol description
slc35d3 Predicted to enable antiporter activity and pyrimidine nucleotide-sugar transmembrane transporter activity. Predicted to be involved in carbohydrate transport and pyrimidine nucleotide-sugar transmembrane transport. Predicted to act upstream of or within energy homeostasis and positive regulation of protein exit from endoplasmic reticulum. Predicted to be located in early endosome and endoplasmic reticulum. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus.

GO: NA

KEGG:

id description
K15281 SLC35D; solute carrier family 35

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_02114824_02116942.mRNA True 4124 mRNA 0.39 2 2114592 2119568

Neighbor

gene id symbol gene type direction distance location
CI01000029_02107558_02110456 PBK coding downstream 3243 2107330 ~ 2111349 (-)
CI01000029_02099152_02101364 CCDC25 coding downstream 12585 2099012 ~ 2102007 (-)
CI01000029_02054840_02058175 NA coding downstream 56206 2054493 ~ 2058386 (-)
CI01000029_02029449_02036156 CYP39A1 coding downstream 78436 2029426 ~ 2036156 (-)
CI01000029_01943164_01970772 RCAN2 coding downstream 143587 1942645 ~ 1971005 (-)
CI01000029_02125408_02143865 PEX7 coding upstream 5754 2125322 ~ 2143865 (-)
CI01000029_02145528_02148347 HEY2 coding upstream 24882 2144450 ~ 2149108 (-)
CI01000029_02159023_02164894 NA coding upstream 39269 2158837 ~ 2165128 (-)
CI01000029_02203122_02221481 TPD52L1 coding upstream 83212 2202780 ~ 2221481 (-)
CI01000029_02231187_02248416 NA coding upstream 111619 2231187 ~ 2249491 (-)
G152762 NA non-coding downstream 283 2113424 ~ 2114309 (-)
G153105 NA non-coding downstream 18510 2095835 ~ 2096082 (-)
G153102 NA non-coding downstream 34308 2080072 ~ 2080284 (-)
G153085 NA non-coding downstream 177028 1934941 ~ 1937564 (-)
G152748 NA non-coding downstream 260984 1853081 ~ 1853608 (-)
G153134 NA non-coding upstream 106149 2225717 ~ 2227563 (-)
G153161 NA non-coding upstream 324095 2443663 ~ 2444082 (-)
G153162 NA non-coding upstream 325583 2445151 ~ 2445890 (-)
G153163 NA non-coding upstream 327562 2447130 ~ 2447590 (-)
G153164 NA non-coding upstream 328047 2447615 ~ 2447842 (-)
CI01000029_01293143_01293964 BATF3 other downstream 820469 1292249 ~ 1294123 (-)
CI01000029_02589994_02592379 NA other upstream 472598 2587549 ~ 2592379 (-)
G153891 NA other upstream 1129209 3248777 ~ 3286554 (-)
CI01000029_03698769_03707177 NA other upstream 1586655 3698572 ~ 3707883 (-)
CI01000029_04460778_04463540 FKBP1B other upstream 2340775 4460159 ~ 4463540 (-)
G154415 NA other upstream 2866540 4986108 ~ 4990990 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018300 SLC35D3 coding NC_007131.7 CM002904.2 39513435 ~ 39517164 (-)