CI01000029_05889701_05899499 (TFAP2D)


Basic Information

Item Value
gene id CI01000029_05889701_05899499
gene name TFAP2D
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 5889101 ~ 5899772 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_05889701_05899499.mRNA
AGTCTTTAAATAACGTACATTCAATATTATTCTGCGATGTAATGTTTTTGCAGCACTATTTCCAAACGAAGTTTTCGATTAAAATGGAAAAAAAATGGCCTTGTGTGATAATAATTAAGAAAAAGTAAAGGGAAATATTCGTTCTACCATGAACTGTATTTGCAATTAAATTTGCTTTCATGCAACGTGTCTCTCGCTCAGTTAAATAGAAATAAAAATATTTGATAAAACAGATTAAGACCACGCTATAAACAAGTGAAATAACGAAACATAATGTTTAATCGTGCAATCAAAATTACAGCGACACAATACACCGAGTTAAACTTACGTGTTGTTGAAAAAAATCCAAAAAGCAGCGCGAGGAAATCGGGTTATTGGATCGCGAGAATGTCAGCCACATTTCCGGGACTGGTGCACGATGCGGAGATACGTCACGACGGATCAAACAGCTACCGTTTGATGCAACTCGGATGCTTGGAATCTGTGGCCAATTCGTCTGTCGCTTACTCTTCGTCGTCTCCGCTTACATACCCAGCTACCGGAACCGAATTTGCCTCCCCGTATTTTCCCACGAACCACCAGTACACGCCCTTACACCACCAGTCCTTCCACTACGAGTTCCAGCACAGCCACCCGGCCGTGAACCCGGACGCGTACTCGTTAAACTCTCTCCATCACTCGCAGCAGTATTACCAGCAGCTCCATCACGGCGAACCGGCGGACTTCATCAACCTTCACAACGCCCGGGCGCTCAAGTCCTCGTGCCTGGACGAACAGCGGCGGGAACTGGGCTGCCTGGACGCGTACCGTAGGCATGACCTGTCAATCATGAGCCACGGCTCTCAGTACGGCATGCACCCCGAGCAAAGACTGCTGCCCGGGGCGGGTCTGGGGCTGCCGCCACCGGGGGCCGATGACCTACAGGGATCTGTAGACGCGCAATGCGGACTCGTGTTAAATGGCCAAGGAGGAGTGATCCGGAGAGGTGGCACGTGCGTAGTGAATCCTACAGACCTGTTCTGCTCTGTACCAGGAAGACTTTCTCTTCTCAGCTCTACCTCAAAGTACAAAGTCACCATCGCTGAAGTCAAACGCCGCCTGTCTCCTCCAGAGTGTCTCAATGCCTCACTACTCGGTGGGATATTAAGAAGAGCCAAGTCAAAGAACGGCGGTCGCTGCCTCAGGGAGAAACTGGACAGGTTGGGACTCAATCTCCCAGCAGGCCGCAGGAAAGCGGCGAACGTCACGCTGTTGACCTCTTTAGTGGAAGGGGAAGCGCTACATCTGGCTCGGGACTTTGGTTACACCTGTGAGACAGAGTTTCCCACCAAAGCGGTCGGGGAGCATCTCGCCCGCCAGCACACGGAACCAAAGGAACAGAACGCGCGCAAGAAAATGGTGCTGGCCACCAAGCAGATCTGTAAGGAATTTCAGGATTTGTTAAGTCAAGATCGATCTCCACTCGGTTCTTCTAGACCAACACCTATTCTGGACTTGGACATTCAGAGACATCTAACACACTTCAGTCTAATCACGCATGGATTTGGTACGCCGGCGATTTGTGCGGCTCTTAGCACCTTTCAAACGATCCTCAGCGAAATGCTTAATTACCTGGAGAAACACTCAGCCAATAAGAGCGCAGGAACGCCAGACACCAGCCAGATCAACTCCAACTCGGACAAAACACTGCGCAAAACCACCGAAGCACCGATGAAGGACGGTAAAATCGAGAAAACAGAATGACTCTGACGCAAGAGTGGCCGCTTTCCCAGTTCCTGATCTGAGCCCTGATGGGCGGGCCTTGTTCAGGGCGTGGCTACTTGGGGCGGGGTTACAGGGTTTTTATTCCATATTCTTTTATTTATATAACTGGCATAACTTCTTATGACCTCAGCTTTGCCTGTATGTACAAACCAGTCACGTCATTCTCACTGCCCAATACTTTGCAAAACAAACCATTTTCATTATTTTATAAGTTATTGAAGAAGTTATTTTGCTTAAAGTTTGTCTGTATGTAATTAGTTTAAATAACGATTTTAAAGATGCAATATCTTTTATTAAAAGACTCACATTCCATTTCTGCCAAGACCTAATTTGAGGTCAGTTTGAGACTGTAAATTATGACAGGTAACTTTCCCTGTTGCAGTTAGTTACTGTATATTGTGCATGTTAAACTTTGTACACCATCTGAAACGGACATTCCCCACTGTTGTTCCAGAACACAAACTCTTGACTGCATTTGTAAAAAAGTTATATATAAATATATAAATTCAATCTTTTCTTGTAGGCTTTGAACTACATATATGAAATAACCCTACATGCAAACTACTGGTGTTCAATAAA

Function

symbol description
tfap2d Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure development; regulation of cell population proliferation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in midbrain; optic tectum; retina; and tegmentum. Orthologous to human TFAP2D (transcription factor AP-2 delta).

GO:

id name namespace
GO:0042127 regulation of cell population proliferation biological_process

KEGG:

id description
K09178 TFAP2D; transcription factor AP-2 delta

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_05889701_05899499.mRNA True 2343 mRNA 0.46 9 5889101 5899772

Neighbor

gene id symbol gene type direction distance location
CI01000029_05873343_05884423 TFAP2B coding downstream 4311 5872881 ~ 5884790 (-)
CI01000029_05742709_05744779 NA coding downstream 144322 5742077 ~ 5744779 (-)
CI01000029_05724774_05734931 NA coding downstream 154170 5724774 ~ 5734931 (-)
CI01000029_05716319_05720037 KIF3C coding downstream 169064 5716110 ~ 5720037 (-)
CI01000029_05675041_05691687 NA coding downstream 197414 5674054 ~ 5691687 (-)
CI01000029_06005746_06011523 HADHB, HADHB.S coding upstream 105364 6005136 ~ 6011523 (-)
CI01000029_06027418_06046659 GAREML, GAREM2 coding upstream 126572 6026344 ~ 6047017 (-)
CI01000029_06051592_06058664 PREP coding upstream 150775 6050547 ~ 6059138 (-)
CI01000029_06099543_06110680 NA coding upstream 199756 6099528 ~ 6110680 (-)
CI01000029_06114050_06116816 NA coding upstream 214192 6113964 ~ 6116816 (-)
G154899 NA non-coding downstream 31772 5857074 ~ 5857329 (-)
G154896 NA non-coding downstream 39602 5849270 ~ 5849499 (-)
G154894 NA non-coding downstream 44273 5844405 ~ 5844828 (-)
G154890 NA non-coding downstream 55077 5833799 ~ 5834024 (-)
G154860 NA non-coding downstream 140974 5746014 ~ 5748127 (-)
G156211 NA non-coding upstream 42660 5942432 ~ 5942667 (-)
G156219 NA non-coding upstream 57094 5956866 ~ 5957196 (-)
G156222 NA non-coding upstream 70225 5969997 ~ 5970215 (-)
G156249 NA non-coding upstream 176390 6076162 ~ 6077632 (-)
G156266 NA non-coding upstream 370147 6269919 ~ 6270120 (-)
G154415 NA other downstream 901676 4986108 ~ 4990990 (-)
CI01000029_04460778_04463540 FKBP1B other downstream 1411889 4460159 ~ 4463540 (-)
CI01000029_03698769_03707177 NA other downstream 2181849 3698572 ~ 3707883 (-)
G153891 NA other downstream 2602547 3248777 ~ 3286554 (-)
CI01000029_02589994_02592379 NA other downstream 3296299 2587549 ~ 2592379 (-)
G156542 NA other upstream 1270595 7170367 ~ 7170951 (-)
G156495 NA other upstream 1466555 7365007 ~ 7371921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location