G155453


Basic Information

Item Value
gene id G155453
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7402063 ~ 7403009 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU176509
ATTCTAAAGTATGCATTTAATTATATATGTAGTTACCAAATACAATTGCAGTTGTAAAGAAAAGAAAAGAAAAATTTCATATTAATTTACAAGGAAATGTACTTGTTTTATTGAAAGCAGAGACTTGTATTAACCTGTCCTCTATTTACATGAATGGGTTATATTTCTGGTAAGTATGAGGAAGAGTGATGTGGCACATGATGGAAAACACATTTACCAGGAACTTGTTTTTGTGTATTTTCTGGTCATTGATTTTTTCCCAGTATCAATATTCTTGACAGCTGCAGAACATTTTCCCTCTTAATCCCAAGCACGAACCTTTCTCCATTAGTGTCTATTTGGTTCGTATTATATGTTTAACACTGTAAACTAAAATAATACGGTTGTGAAGTAAACAACATAGTTGTTGGCAGACGTTTATGAAATGATTCATGGTACCTGGTAGGGGTGTAAAGCCTCGGTTAAATACTCCAGTTCGGACGCGTACACGGACAGCACGGACGCGGACTACTTGTATTTACTAGTCCGCTCGGCGGACGTGTTCCACACATGCGCAGTACATCGGCGTGTACATGCGCATTAGATCTGCTTGAACAGTAAACAAACATGGATTATTGCACATTATTATTATTGCACATCTGGCTGTCTTTATATTGTTTTAATGACGGATTGTAGAAGTGCGGGTAGCGACTTCTTCACACAGCCTCTCTCCAAATTCGACGTCCACGTTGTTTTTCCAGCGCATGCGCAGTTGGTGCTTTTGTAGCCTGGTACGCGCGGTCACAAAAAATGTCCGCAAAAACCCTCGCGCACGCGGAAAGAATAAAGCCCAGGGTATAGAGGGTATGCATAGACGTCACTTTCCCGCCAGAACGCGCTCCCTCAGCTGGACTGAGTGGCAAAAGAACCTGCTGCATGACTGGGTTTAATAGGGGAAACTGCGAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU176509 True 947 lncRNA 0.41 1 7402063 7403009

Neighbor

gene id symbol gene type direction distance location
CI01000029_07365981_07371241 HSP90AB1, HSP90BB, HS90B coding upstream 30462 7365981 ~ 7371601 (+)
CI01000029_07338994_07342252 IF2A, EIF2S1B, EIF2S1 coding upstream 59321 7338994 ~ 7342742 (+)
CI01000029_07304652_07330373 NA coding upstream 71607 7304652 ~ 7330456 (+)
CI01000029_07252129_07298828 GPHN, GPHNA, GPHNB, GPHN.L coding upstream 102217 7252129 ~ 7299846 (+)
CI01000029_07214426_07214941 NA coding upstream 187074 7214426 ~ 7214989 (+)
CI01000029_07426889_07428262 TMEM151BA, TMEM151B coding downstream 21430 7424439 ~ 7428443 (+)
CI01000029_07500425_07501888 NA coding downstream 97316 7500325 ~ 7502032 (+)
CI01000029_07503905_07506541 TLR5B coding downstream 100896 7503905 ~ 7506835 (+)
CI01000029_07514095_07516740 NA coding downstream 110997 7514006 ~ 7516742 (+)
CI01000029_07540982_07543852 NA coding downstream 135933 7538942 ~ 7543895 (+)
G155444 NA non-coding upstream 20654 7381172 ~ 7381409 (+)
G155431 NA non-coding upstream 91030 7310825 ~ 7311033 (+)
G155429 NA non-coding upstream 92555 7308832 ~ 7309508 (+)
G155342 NA non-coding upstream 193269 7208551 ~ 7208794 (+)
G155417 NA non-coding upstream 202350 7199147 ~ 7199713 (+)
G155454 NA non-coding downstream 36 7403045 ~ 7404232 (+)
G155455 NA non-coding downstream 14159 7417168 ~ 7417511 (+)
G155457 NA non-coding downstream 15796 7418805 ~ 7419035 (+)
G155463 NA non-coding downstream 50763 7453772 ~ 7454356 (+)
G155335 NA non-coding downstream 62572 7465581 ~ 7468513 (+)
CI01000029_06906861_06907157 NA other upstream 494631 6905834 ~ 6908633 (+)
G155083 NA other upstream 911769 6431535 ~ 6490294 (+)
G155079 NA other upstream 1113665 6282685 ~ 6288398 (+)
CI01000029_05461497_05468985 BATF other upstream 1931717 5461497 ~ 5470346 (+)
G154587 NA other upstream 2130528 5271020 ~ 5271535 (+)
G155522 NA other downstream 231824 7634833 ~ 7637834 (+)
G155627 NA other downstream 528471 7931480 ~ 7932177 (+)
G156007 NA other downstream 1561809 8964818 ~ 9064541 (+)

Expression


Co-expression Network