Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU176509 |
| length | 947 |
| lncRNA type | antisense_over |
| GC content | 0.41 |
| exon number | 1 |
| gene id | G155453 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000029 |
| NCBI id | null |
| chromosome length | 9486966 |
| location | 7402063 ~ 7403009 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU176498 | lncRNA | upstream | 20654 | 7381172 ~ 7381409 (+) | True | G155444 |
| TU176485 | lncRNA | upstream | 91030 | 7310825 ~ 7311033 (+) | True | G155431 |
| TU176483 | lncRNA | upstream | 92555 | 7308832 ~ 7309508 (+) | True | G155429 |
| TU176383 | lncRNA | upstream | 193269 | 7208551 ~ 7208794 (+) | True | G155342 |
| TU176467 | lncRNA | upstream | 202350 | 7199147 ~ 7199713 (+) | True | G155417 |
| TU176510 | lncRNA | downstream | 36 | 7403045 ~ 7404232 (+) | True | G155454 |
| TU176511 | lncRNA | downstream | 14159 | 7417168 ~ 7417511 (+) | True | G155455 |
| TU176519 | lncRNA | downstream | 15796 | 7418805 ~ 7419035 (+) | True | G155457 |
| TU176532 | lncRNA | downstream | 50763 | 7453772 ~ 7454356 (+) | True | G155463 |
| TU176376 | lncRNA | downstream | 62572 | 7465581 ~ 7468513 (+) | True | G155335 |
| CI01000029_07365981_07371241.mRNA | mRNA | upstream | 30462 | 7365981 ~ 7371601 (+) | True | CI01000029_07365981_07371241 |
| CI01000029_07338994_07342252.mRNA | mRNA | upstream | 59321 | 7338994 ~ 7342742 (+) | True | CI01000029_07338994_07342252 |
| CI01000029_07304652_07330373.mRNA | mRNA | upstream | 71607 | 7304652 ~ 7330456 (+) | True | CI01000029_07304652_07330373 |
| CI01000029_07252129_07298828.mRNA | mRNA | upstream | 102217 | 7252129 ~ 7299846 (+) | True | CI01000029_07252129_07298828 |
| CI01000029_07214426_07214941.mRNA | mRNA | upstream | 187074 | 7214426 ~ 7214989 (+) | True | CI01000029_07214426_07214941 |
| CI01000029_07426889_07428262.mRNA | mRNA | downstream | 21430 | 7424439 ~ 7428443 (+) | True | CI01000029_07426889_07428262 |
| CI01000029_07500425_07501888.mRNA | mRNA | downstream | 97316 | 7500325 ~ 7502032 (+) | True | CI01000029_07500425_07501888 |
| CI01000029_07503905_07506541.mRNA | mRNA | downstream | 100896 | 7503905 ~ 7506835 (+) | True | CI01000029_07503905_07506541 |
| CI01000029_07514095_07516740.mRNA | mRNA | downstream | 110997 | 7514006 ~ 7516742 (+) | True | CI01000029_07514095_07516740 |
| CI01000029_07540982_07543852.mRNA | mRNA | downstream | 135933 | 7538942 ~ 7543895 (+) | True | CI01000029_07540982_07543852 |
| TU176307 | other | upstream | 494631 | 6906188 ~ 6907432 (+) | False | CI01000029_06906861_06907157 |
| TU176095 | other | upstream | 911769 | 6431535 ~ 6490294 (+) | False | G155083 |
| TU176099 | other | upstream | 911769 | 6431535 ~ 6490294 (+) | True | G155083 |
| TU176089 | other | upstream | 1113665 | 6282685 ~ 6288398 (+) | True | G155079 |
| TU175455 | other | upstream | 1931717 | 5457241 ~ 5457472 (+) | True | G154531 |
| TU176602 | other | downstream | 231824 | 7634833 ~ 7637834 (+) | True | G155522 |
| TU176707 | other | downstream | 528471 | 7931480 ~ 7932177 (+) | True | G155627 |
| TU177125 | other | downstream | 1561809 | 8964818 ~ 9064541 (+) | False | G156007 |
