RNA id: TU176498


Basic Information

Item Value
RNA id TU176498
length 238
lncRNA type inter_gene
GC content 0.25
exon number 1
gene id G155444
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7381172 ~ 7381409 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTTACCTTTAGACGACAAATTTAAATTTTAAATTCAATATTGATTTAAACAGAACTCTTGAACTAATTTACAGTATGTAACGCAAGTACATTATAAGTAACTGTAATTAAATGACCTAAAAATGAACAGTATAATCCTTTACTTTTTCAAGAATTAAGTAATTTAATTACAATTTACAGTTTACAATTTAATTTACTTAGTAATGCGTTACACCCAACACTGCTTACGGTTTATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176485 lncRNA upstream 70139 7310825 ~ 7311033 (+) True G155431
TU176483 lncRNA upstream 71664 7308832 ~ 7309508 (+) True G155429
TU176383 lncRNA upstream 172378 7208551 ~ 7208794 (+) True G155342
TU176467 lncRNA upstream 181459 7199147 ~ 7199713 (+) True G155417
TU176462 lncRNA upstream 196143 7184815 ~ 7185029 (+) True G155412
TU176509 lncRNA downstream 20654 7402063 ~ 7403009 (+) True G155453
TU176510 lncRNA downstream 21636 7403045 ~ 7404232 (+) True G155454
TU176511 lncRNA downstream 35759 7417168 ~ 7417511 (+) True G155455
TU176519 lncRNA downstream 37396 7418805 ~ 7419035 (+) True G155457
TU176532 lncRNA downstream 72363 7453772 ~ 7454356 (+) True G155463
CI01000029_07365981_07371241.mRNA mRNA upstream 9571 7365981 ~ 7371601 (+) True CI01000029_07365981_07371241
CI01000029_07338994_07342252.mRNA mRNA upstream 38430 7338994 ~ 7342742 (+) True CI01000029_07338994_07342252
CI01000029_07304652_07330373.mRNA mRNA upstream 50716 7304652 ~ 7330456 (+) True CI01000029_07304652_07330373
CI01000029_07252129_07298828.mRNA mRNA upstream 81326 7252129 ~ 7299846 (+) True CI01000029_07252129_07298828
CI01000029_07214426_07214941.mRNA mRNA upstream 166183 7214426 ~ 7214989 (+) True CI01000029_07214426_07214941
CI01000029_07426889_07428262.mRNA mRNA downstream 43030 7424439 ~ 7428443 (+) True CI01000029_07426889_07428262
CI01000029_07500425_07501888.mRNA mRNA downstream 118916 7500325 ~ 7502032 (+) True CI01000029_07500425_07501888
CI01000029_07503905_07506541.mRNA mRNA downstream 122496 7503905 ~ 7506835 (+) True CI01000029_07503905_07506541
CI01000029_07514095_07516740.mRNA mRNA downstream 132597 7514006 ~ 7516742 (+) True CI01000029_07514095_07516740
CI01000029_07540982_07543852.mRNA mRNA downstream 157533 7538942 ~ 7543895 (+) True CI01000029_07540982_07543852
TU176307 other upstream 473740 6906188 ~ 6907432 (+) False CI01000029_06906861_06907157
TU176095 other upstream 890878 6431535 ~ 6490294 (+) False G155083
TU176099 other upstream 890878 6431535 ~ 6490294 (+) True G155083
TU176089 other upstream 1092774 6282685 ~ 6288398 (+) True G155079
TU175455 other upstream 1910826 5457241 ~ 5457472 (+) True G154531
TU176602 other downstream 253424 7634833 ~ 7637834 (+) True G155522
TU176707 other downstream 550071 7931480 ~ 7932177 (+) True G155627
TU177125 other downstream 1583409 8964818 ~ 9064541 (+) False G156007

Expression Profile