RNA id: TU176485


Basic Information

Item Value
RNA id TU176485
length 209
lncRNA type intronic
GC content 0.48
exon number 1
gene id G155431
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7310825 ~ 7311033 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCTCCCAGTCAGGTGTGGGGTGTGGGAAAAAGTGAAATTAGAGGAGAGGGCCATTGGTGGGGCAGTTTCCTCTGGTTTGATCCAGATCTCAGTCAGAGGCACGAGATGGAGACCTGAATGAGTAGCGATAGATGTAATGAAGTCTGCTTTGTTTACAGCAGATTGGCAATTCCAAAGACCAACAGGAATAGAGGGTGATGTACCAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176483 lncRNA upstream 1317 7308832 ~ 7309508 (+) True G155429
TU176383 lncRNA upstream 102031 7208551 ~ 7208794 (+) True G155342
TU176467 lncRNA upstream 111112 7199147 ~ 7199713 (+) True G155417
TU176462 lncRNA upstream 125796 7184815 ~ 7185029 (+) True G155412
TU176452 lncRNA upstream 134942 7175651 ~ 7175883 (+) True G155402
TU176498 lncRNA downstream 70139 7381172 ~ 7381409 (+) True G155444
TU176509 lncRNA downstream 91030 7402063 ~ 7403009 (+) True G155453
TU176510 lncRNA downstream 92012 7403045 ~ 7404232 (+) True G155454
TU176511 lncRNA downstream 106135 7417168 ~ 7417511 (+) True G155455
TU176519 lncRNA downstream 107772 7418805 ~ 7419035 (+) True G155457
CI01000029_07252129_07298828.mRNA mRNA upstream 10979 7252129 ~ 7299846 (+) True CI01000029_07252129_07298828
CI01000029_07214426_07214941.mRNA mRNA upstream 95836 7214426 ~ 7214989 (+) True CI01000029_07214426_07214941
CI01000029_07206718_07211765.mRNA mRNA upstream 98417 7205687 ~ 7212408 (+) True CI01000029_07206718_07211765
CI01000029_07132444_07166752.mRNA mRNA upstream 143895 7132444 ~ 7166930 (+) True CI01000029_07132444_07166752
CI01000029_06923683_06924032.mRNA mRNA upstream 386740 6923228 ~ 6924085 (+) True CI01000029_06923683_06924032
CI01000029_07338994_07342252.mRNA mRNA downstream 27961 7338994 ~ 7342742 (+) True CI01000029_07338994_07342252
CI01000029_07365981_07371241.mRNA mRNA downstream 54948 7365981 ~ 7371601 (+) True CI01000029_07365981_07371241
CI01000029_07426889_07428262.mRNA mRNA downstream 113406 7424439 ~ 7428443 (+) True CI01000029_07426889_07428262
CI01000029_07500425_07501888.mRNA mRNA downstream 189292 7500325 ~ 7502032 (+) True CI01000029_07500425_07501888
CI01000029_07503905_07506541.mRNA mRNA downstream 192872 7503905 ~ 7506835 (+) True CI01000029_07503905_07506541
TU176307 other upstream 403393 6906188 ~ 6907432 (+) False CI01000029_06906861_06907157
TU176095 other upstream 820531 6431535 ~ 6490294 (+) False G155083
TU176099 other upstream 820531 6431535 ~ 6490294 (+) True G155083
TU176089 other upstream 1022427 6282685 ~ 6288398 (+) True G155079
TU175455 other upstream 1840479 5457241 ~ 5457472 (+) True G154531
TU176602 other downstream 323800 7634833 ~ 7637834 (+) True G155522
TU176707 other downstream 620447 7931480 ~ 7932177 (+) True G155627
TU177125 other downstream 1653785 8964818 ~ 9064541 (+) False G156007

Expression Profile