RNA id: TU176452


Basic Information

Item Value
RNA id TU176452
length 233
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G155402
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7175651 ~ 7175883 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCAGGACTTGGGTAGAAAAAATAACCCAAGATTTTTTAGAGTGTTTTGAAATATATCATTGAGGTTTAATTCAATCATCTCAGATGAAAATGAATGATCAGATCTTTGTGAAATAGTGTGAGAATAAACCCAAACCACTGCTGTCTCTTCAGGTGTATGCAGTGCTTTCACTGGAACCAGCTCATTATTTTCCTGGTCTTGTCGGTTTATTTTGATTATTTTGTATCCAGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176440 lncRNA upstream 101103 7074292 ~ 7074548 (+) True G155391
TU176430 lncRNA upstream 109596 7065705 ~ 7066055 (+) True G155389
TU176408 lncRNA upstream 164350 7011096 ~ 7011301 (+) True G155367
TU176398 lncRNA upstream 173763 7001439 ~ 7001888 (+) True G155357
TU176306 lncRNA upstream 267018 6906375 ~ 6908633 (+) True CI01000029_06906861_06907157
TU176462 lncRNA downstream 8932 7184815 ~ 7185029 (+) True G155412
TU176467 lncRNA downstream 23264 7199147 ~ 7199713 (+) True G155417
TU176383 lncRNA downstream 32668 7208551 ~ 7208794 (+) True G155342
TU176483 lncRNA downstream 132949 7308832 ~ 7309508 (+) True G155429
TU176485 lncRNA downstream 134942 7310825 ~ 7311033 (+) True G155431
CI01000029_07132444_07166752.mRNA mRNA upstream 8721 7132444 ~ 7166930 (+) True CI01000029_07132444_07166752
CI01000029_06923683_06924032.mRNA mRNA upstream 251566 6923228 ~ 6924085 (+) True CI01000029_06923683_06924032
CI01000029_06906861_06907157.mRNA mRNA upstream 268264 6905834 ~ 6907387 (+) False CI01000029_06906861_06907157
CI01000029_06865685_06903896.mRNA mRNA upstream 271755 6865685 ~ 6903896 (+) True CI01000029_06865685_06903896
CI01000029_06834812_06849277.mRNA mRNA upstream 326133 6833577 ~ 6849518 (+) True CI01000029_06834812_06849277
CI01000029_07206718_07211765.mRNA mRNA downstream 29804 7205687 ~ 7212408 (+) True CI01000029_07206718_07211765
CI01000029_07214426_07214941.mRNA mRNA downstream 38543 7214426 ~ 7214989 (+) True CI01000029_07214426_07214941
CI01000029_07252129_07298828.mRNA mRNA downstream 76246 7252129 ~ 7299846 (+) True CI01000029_07252129_07298828
CI01000029_07304652_07330373.mRNA mRNA downstream 128769 7304652 ~ 7330456 (+) True CI01000029_07304652_07330373
CI01000029_07338994_07342252.mRNA mRNA downstream 163111 7338994 ~ 7342742 (+) True CI01000029_07338994_07342252
TU176307 other upstream 268219 6906188 ~ 6907432 (+) False CI01000029_06906861_06907157
TU176095 other upstream 685357 6431535 ~ 6490294 (+) False G155083
TU176099 other upstream 685357 6431535 ~ 6490294 (+) True G155083
TU176089 other upstream 887253 6282685 ~ 6288398 (+) True G155079
TU175455 other upstream 1705305 5457241 ~ 5457472 (+) True G154531
TU176602 other downstream 458950 7634833 ~ 7637834 (+) True G155522
TU176707 other downstream 755597 7931480 ~ 7932177 (+) True G155627
TU177125 other downstream 1788935 8964818 ~ 9064541 (+) False G156007

Expression Profile