XLOC_008874


Basic Information

Item Value
gene id XLOC_008874
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 428419 ~ 429647 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018808
tgcatgtgcgtgcttGTACATGTTTGTgtctgtgcgtgcgtgcgtgcgtgcgtgtgtgtgtgtgtgattgctcGGCGCAGGAGGCTGTGCTGCGGCAGCAGGAGGAGCAGCTGGCTctgctggaggagctggaggagcagCGGCGGGAGCTCCAgcagcagctcacacacactctACACACACTGCAGGAGCCTGAACACCAGCAGGAGGAGATCAGCAGCACACATCCTGAACCACCtgcacagGCTGAGTCAGACACATTCAGACTCCATCAGTACCAGCAGAGGCTCCTGCAGCAGAACCGACTGCACAGGCAGTTCATTGCTGAAGCTCAGCGGCGGCTGCAGGAGCACCAGCAGAGTCTGAGGACACACTCCAGCATGAGCAGCGCTGCAGAGACAGAGACAACACAGAAGAGGAAGAGGATCTGTGTGTCTCTGCAGCTCCGAGAGCAGAGTCTGTCTGCATCTGCACACACTCCTGCTGGAGGATCTGCGTCTGCACACACTCCTGCTGGAGGATCTGCGTCTGCACACACAGGTTATTCTACCGCTGCATCTCTACATCCCTCTTTAtttggatgaggagattccccccattgtgtaaagcgctttaagtgtctagaaaagcactGTATAATCATAAGGTgctatgattattaatattatgattattattattataattgttgc

Function

GO:

id name namespace
GO:0010608 posttranscriptional regulation of gene expression biological_process
GO:0016441 posttranscriptional gene silencing biological_process
GO:0016458 gene silencing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0031047 gene silencing by RNA biological_process
GO:0043412 macromolecule modification biological_process
GO:0006464 cellular protein modification process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0040029 regulation of gene expression, epigenetic biological_process
GO:0036211 protein modification process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0035194 post-transcriptional gene silencing by RNA biological_process
GO:0035195 gene silencing by miRNA biological_process
GO:0035770 ribonucleoprotein granule cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0036464 cytoplasmic ribonucleoprotein granule cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0061980 regulatory RNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0035198 miRNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018808 True 692 lncRNA 0.53 3 428419 429647

Neighbor

gene id symbol gene type direction distance location
XLOC_008873 CABZ01056628.1 coding downstream 2663 425695 ~ 425756 (-)
XLOC_008872 psph coding downstream 8822 413543 ~ 419597 (-)
XLOC_008871 NA coding downstream 50232 374380 ~ 378187 (-)
XLOC_008870 FP102887.1 coding downstream 78852 349451 ~ 349567 (-)
XLOC_008869 BX640522.2 coding downstream 137912 282731 ~ 290507 (-)
XLOC_008875 CABZ01056629.1 coding upstream 3388 433035 ~ 436530 (-)
XLOC_008876 CABZ01033206.1 coding upstream 19450 449097 ~ 452347 (-)
XLOC_008877 CABZ01033205.1 coding upstream 24702 454349 ~ 462783 (-)
XLOC_008878 mfrp coding upstream 34582 464229 ~ 477223 (-)
XLOC_008879 nudt8 coding upstream 70201 499848 ~ 506010 (-)
XLOC_008868 NA non-coding downstream 167606 255285 ~ 260813 (-)
XLOC_008885 NA non-coding upstream 193062 622709 ~ 633408 (-)
XLOC_008893 NA non-coding upstream 383449 813096 ~ 815019 (-)
XLOC_008894 NA non-coding upstream 388544 818191 ~ 848462 (-)
XLOC_008895 NA non-coding upstream 407368 837015 ~ 848792 (-)
XLOC_008896 NA non-coding upstream 440314 869961 ~ 909037 (-)

Expression


Co-expression Network