G169340


Basic Information

Item Value
gene id G169340
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1250219 ~ 1310878 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU192378
TTTTTTTTTTTTTTTTTTATGTCTTTTTAAATGTTTATTTAAAAAACATTCAAGTTATCTGATAAGCAGTGAAAGGCCCATACTACTACAAAATATTGAGTTCTACACAGAACTTAAATGCACATCATCTGAATAAAGACTTTTTAAATAAAGTTTAAATATTAAGCATTTGTACAGCACAATTTCAATTGGGAAATTTCAAGACAGACAAAGATCATCAATAGACAATGCACTTCTATATATAATACTGCGCATACAAATGGATACACAAGATAAAAATACACTAGTGAAAGAATATCAAGCTTTGCTGACAAACTAAAATGAAGTGTTTCTACTTAGACACTGGGGAAGAATCAAAACAGTTATTTATTCAACCCTTCATAAAATACTTTCTTTTAGAACCAACATTCCTAGTATTCTGCACTTCAGGCTATGCTGAAACCGTCCATTTCTCTCAGCTTCAAGCCTCTGTGTCCATATTATTCTATGACCTCACACTTTTGCTCTCTCTTGCCCTCTTGACTTCTTCCATTAGCTCTTTCAGGTACTGGATCTCTTTAGCTATGGACTCTGCTTTTTCCACCAGCTCTTGATTCCTCTCCTCAAGGACTGTACACTCTGACTGGAGGGCCTCTTGCTCTGCACGCTTTTTCTGTCTGTAGCGGGTCGCCGCAGTCTTGTTCTGCTCCATTTTCTTCAGCTTTTTCTTCTCAACCACAACCTTTGAGCCACTGACTGACTTCACTCTTCCTGCGAGGGTAGGCGACTCTGACTGCTGATTTTGGGTGGGCTTAGAATCAGGTGTGGGGTAGGACTTCACCCTAGAAGACAGAGACTGGGGAGAGGTTGGGATTTGTGGGTCAGGGGAAGTTGGACTTGGGGAATTCTCCACAACCACCTCACCTGGATGGGTAACCATCGCATTAACCTCCTCTTTGGGAGAAAGTACAAGAAGGATGCGGGTTGGGGAGAGGGACAGGACAATTTTGGGCACCCGCATCTCGACAGGGGATGGACTCTGCACTTCAGCTATGTCCACCTCGCAACCAAGCTCAAGAGTATCAGTAGGGGACTCGGGTGGAAGGATGGAAGGTGATGGGACTGGGGAGGCCGGTTCAGACTTTATCTCAAACTCAGCCTGGGGCTCAGGGACCACAGAGGAGGAATCTGACAATTCACAGGGTGATGAGGGAATGAAAGGAGTAGCAACTGGAGTATTCAAAGTAAATGAAAGGTTGGAAAGTTGATTGATTTCAGGGACAGACACTGTTAGAGAGGGTGAAGGCGTATTGTCAGAAGCTACAGACTGGGACTCCAGGTCTATCTCTGACTCCAGAGAAGCGATGAGCTCCTCAGGAGAACTGGGTGGATCCTCAGAATCATAGGAGCCAATGAAAGACTCCAGATCAAACTCACTCAAATCAATTCGCTCCGTCATCCAATCCATTTCACTGAACGAATGATCTTGCCACTGTCTGCACCATGATTATCTAGGCACAGCTCATCTGAGGGGAACCAGGACAGGGACAGCTGATTGAGCCCAGCCTTCTCCCCCCTCTGAGTGGAGGGAGGAGTGCAGGGTGGTGAGAGAGAGGGAAGTGGAGAGGAAGAGAAAGATGAGAGGGGCGATTCAGCGCCTCCGAGAGGAAGAACCTCCTCATCTTTATCTAGGATGGACCCCAGAGGGTCAGCCATCGGTGATGATGGGTCCCAAAAAAGGTCCTCCATATCGTCCTGGCCAAACCGTGAGCTCATCAAAGACATGGCTGTCTATTTCAAGTGGAATCAACGAGTCTTCTACTGAGAATTCGAATAATTTCGTGCTGTCAGGTACAGCAAAGATCAGAGTTGCCACAAAGGACCCATTTTGATATAAATGTACTGAGCCAGTGCACTATGTTGATGCACTGAGGAGTTTGCGCGCTGTCTACAGGCTGCAGTTCACACGGCCATTTCGGCGGAGAGCAGAATCGCTCGAGTATCAACAAAAAAAATCAGCTGGGAGAAGAAAAGATC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU192378 True 2016 TUCP 0.45 4 1250219 1310878

Neighbor

gene id symbol gene type direction distance location
CI01000034_01210160_01223724 NA coding upstream 26350 1210160 ~ 1223869 (+)
CI01000034_01139725_01146104 BAIAP2L2A coding upstream 103895 1139725 ~ 1146324 (+)
CI01000034_01124686_01125224 NA coding upstream 124022 1124686 ~ 1126197 (+)
CI01000034_00951238_00955839 NA coding upstream 294132 950467 ~ 956087 (+)
CI01000034_00943362_00945523 NA coding upstream 304588 943362 ~ 945631 (+)
CI01000034_01383935_01395565 NA coding downstream 72713 1383591 ~ 1396448 (+)
CI01000034_01632580_01633233 NA coding downstream 321124 1632002 ~ 1633525 (+)
CI01000034_01637348_01637904 NA coding downstream 325733 1636611 ~ 1638009 (+)
CI01000034_01657515_01658817 NA coding downstream 346332 1657210 ~ 1659106 (+)
CI01000034_01729413_01730790 EVE1 coding downstream 418535 1729413 ~ 1731179 (+)
G169422 NA non-coding upstream 1847 1248147 ~ 1248372 (+)
G169417 NA non-coding upstream 17130 1232887 ~ 1233089 (+)
G169391 NA non-coding upstream 117751 1127749 ~ 1132468 (+)
G169392 NA non-coding upstream 122575 1126456 ~ 1127644 (+)
G169456 NA non-coding downstream 42280 1353158 ~ 1353446 (+)
G169458 NA non-coding downstream 46115 1356993 ~ 1357240 (+)
G169460 NA non-coding downstream 54327 1365205 ~ 1365584 (+)
G169461 NA non-coding downstream 58258 1369136 ~ 1369364 (+)
G169394 NA other upstream 56659 1150297 ~ 1193560 (+)
G169357 NA other upstream 131200 1053543 ~ 1119019 (+)
G169309 NA other upstream 280298 969261 ~ 969921 (+)
CI01000034_00643011_00645310 RBX1 other upstream 603809 642901 ~ 645310 (+)
G169806 NA other downstream 1007095 2317973 ~ 2337690 (+)
CI01000034_03432846_03437608 NDUFA4, NDUFA4L other downstream 2123258 3432846 ~ 3438839 (+)
CI01000034_04125435_04125780 RPRML other downstream 2814222 4125100 ~ 4126825 (+)
CI01000034_04192675_04200041 NA other downstream 2883760 4192311 ~ 4200636 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025321 atf4b coding NC_007114.7 CM002887.2 24197934 ~ 24200819 (+)