G169606


Basic Information

Item Value
gene id G169606
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1950430 ~ 1952366 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU192686
TGTTGCTCAGCACATTTCTGCATTTTATTATGACAGTACTTATGCAATTATTGAACATGATGACGCTTATTTCAAATGGAGAACATCTTCCTCTTGTTCATGTGGTAGCAATTTACATGGCAGGGGTAAAAAGGAAATAAAACAGTACAGAGAAAATGGAGTCGAGTTCGTAAAACAACTATAAAAATCAATGGCGTTCCTGCTTTATGTTAGGTGTCAGACAAATGTGCTAATGTCATAATTATGAAAATTACAATCAAATTACATGTTGTTGCATTTTTCCCCCCTCCAATATAGTTCCAAGTTGATGCATGTTTAACGACACCACATCTTTAAACATGTTATTCTGTACTCATTAGATTTCGATTTAAATACACTGTAGACACCGAAAATAAAGAGGAACCAACTATTACACCAGCAATTGAGGAGAGAAACACAGAGCTCTTTCCTGTACATGGAAGCAAATTCCTTTCATTAAAGGCAGCAGCTAAGCTAAGCTAAGCTAGGCTAAAGTGTGAAATTTAAAAGCGTTAATAAGATTCAAAGTCGACCATTTCCTTCATAACTCAGTTTGCTCATTTCTACAGTGTAAAGCAAGGGGAAAATAAATGTTTCCATGTCTCAACTGAATTGTGCCACCGTCTGGACATCCATACACATAAGCTCATCGTGTACTAGCCAGCACATTACAATAATAAATCCCAGCAAAAGAGGCTCACAGTAAACAGAACTGTACACAGCAAATATGACCGTTTTGTTAGAATATCCTAGGTCCTTGTCAACCCAGCGGGCTTCCTTACGGATGGGAAATCACGGTTTCCTTGACATTGTGCAAATAAAAGAAAAAAGCCCTCAAAATGGGTCTATTTTTGAGATCTATATACATTTATCAATCATTGTGTAATCCTTTCAATTCAATTCCTCAAATATGTTCTGCACTTGGTTGCGAGATAACACTGAAGTTTCTAGTCAGGGTTAAACAGTCAACGAATTAAGAGCAGTGAAACTCAGATAAAAGTCCCATAATTAATCAAGCGAGAAATATCGTTTCCAGTCAGTGCTTGTCCTCGCTTGCTTTAAAAATTGTTTTAGGTGACTATTGACAACGAAAGTCAGACATAAACTCATCTTATTTCGTTTTAGGATGATTGACGTACAAAATATTTTAGACTTAGCTGCGGAATATCAATGACTTTAAGATTTCTAGAATAGGCTATGTTCGTTGCATCGTTTTGCAAAACTTTGTCCTTTGTATTCTCAGTGTTATCCTGATGCTCATCATTTTTAACCAATGTAAAATGACTTGTAATATTTAAAAAATGTATTAAAACTATATGAAAATAAACAATCACATAAAAAGCTAAACACGTAAATACTTTCGGGGGGCGGGGGGAATGGAAGAATCCAATAGCTACTCCTGAGGGGTTTCAATACTGCGCTGAGTTTTCCGACATTTGAAAAACAAACTCGATTCTCTTTCATTTTATATGGTTGATGTGAGAGGCCCAACAGTGAAGAGAACAGGCCACAGCTATCCGACCAAACTATAATCTGCGCTTCACAGCACTCCGGTAATTGATTGATTTTTAAGGGCTGTGTTCACACAGAAGACGTTCTTCGGTAAGGCGCTGCGTCCGAAAGCCGAAAAATACACGGAGGTAAGAAGTCAACAAGGCACGTCCTAATCCACTGATCGTCACATCCTGACTGATCCCTTCAGCTGATCGATTTTTGAAGGCAGCATAGATGTATCCTTCACTGCCTATGATATATCAAAATCCTGTGTGTTCCATTCAAGAAAATTAGTATTGTAATTTTCTGTTATCACCAAAGCTCTATTTTGTTGTAGTCTGTCCTACACTGCCCGGCCAAAAAAAAAGAAAAAGTTGCTGTTTGGATTTTAATAGGCAAATACTTAAGAGTCTATGAATGGATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192686 True 1937 lncRNA 0.37 1 1950430 1952366

Neighbor

gene id symbol gene type direction distance location
CI01000034_01900645_01947187 RAPGEFL1 coding upstream 3243 1900645 ~ 1947187 (+)
CI01000034_01872601_01880795 CASC3 coding upstream 69635 1872601 ~ 1880795 (+)
CI01000034_01862099_01867869 NA coding upstream 82561 1862099 ~ 1867869 (+)
CI01000034_01858418_01860499 NA coding upstream 89345 1858418 ~ 1861085 (+)
CI01000034_01811735_01836960 IGF2BP1 coding upstream 113470 1811467 ~ 1836960 (+)
CI01000034_02231423_02231755 NA coding downstream 278937 2231303 ~ 2232124 (+)
CI01000034_02256162_02260170 NA coding downstream 303399 2255765 ~ 2260464 (+)
CI01000034_02275470_02281951 CYB561 coding downstream 322235 2274601 ~ 2282604 (+)
CI01000034_02421189_02423360 NA coding downstream 468660 2421026 ~ 2423527 (+)
CI01000034_02550332_02552258 NA coding downstream 597966 2550332 ~ 2552839 (+)
G169620 NA non-coding upstream 40366 1894480 ~ 1910064 (+)
G169611 NA non-coding upstream 119539 1827583 ~ 1830891 (+)
G169477 NA non-coding upstream 258360 1691030 ~ 1692070 (+)
G169482 NA non-coding upstream 272784 1676497 ~ 1677646 (+)
G169616 NA non-coding downstream 129 1952495 ~ 1952784 (+)
G169612 NA non-coding downstream 543 1952909 ~ 1953359 (+)
G169636 NA non-coding downstream 31431 1983797 ~ 1984917 (+)
G169653 NA non-coding downstream 50455 2002821 ~ 2003253 (+)
G169656 NA non-coding downstream 52702 2005068 ~ 2005440 (+)
CI01000034_01729413_01730790 EVE1 other upstream 219253 1729413 ~ 1731179 (+)
G169340 NA other upstream 639552 1250219 ~ 1310878 (+)
G169394 NA other upstream 756870 1150297 ~ 1193560 (+)
G169357 NA other upstream 831411 1053543 ~ 1119019 (+)
G169309 NA other upstream 980509 969261 ~ 969921 (+)
G169806 NA other downstream 365607 2317973 ~ 2337690 (+)
CI01000034_03432846_03437608 NDUFA4, NDUFA4L other downstream 1481770 3432846 ~ 3438839 (+)
CI01000034_04125435_04125780 RPRML other downstream 2172734 4125100 ~ 4126825 (+)
CI01000034_04192675_04200041 NA other downstream 2242272 4192311 ~ 4200636 (+)

Expression


Co-expression Network