Gene
RNA
| Item | Value |
|---|---|
| gene id | G169612 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000034 |
| NCBI id | null |
| chromosome length | 5914002 |
| location | 1952909 ~ 1953359 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| unnamed protein product |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU192692 | True | 451 | lncRNA | 0.43 | 1 | 1952909 | 1953359 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000034_01900645_01947187 | RAPGEFL1 | coding | upstream | 5722 | 1900645 ~ 1947187 (+) |
| CI01000034_01872601_01880795 | CASC3 | coding | upstream | 72114 | 1872601 ~ 1880795 (+) |
| CI01000034_01862099_01867869 | NA | coding | upstream | 85040 | 1862099 ~ 1867869 (+) |
| CI01000034_01858418_01860499 | NA | coding | upstream | 91824 | 1858418 ~ 1861085 (+) |
| CI01000034_01811735_01836960 | IGF2BP1 | coding | upstream | 115949 | 1811467 ~ 1836960 (+) |
| CI01000034_02231423_02231755 | NA | coding | downstream | 277944 | 2231303 ~ 2232124 (+) |
| CI01000034_02256162_02260170 | NA | coding | downstream | 302406 | 2255765 ~ 2260464 (+) |
| CI01000034_02275470_02281951 | CYB561 | coding | downstream | 321242 | 2274601 ~ 2282604 (+) |
| CI01000034_02421189_02423360 | NA | coding | downstream | 467667 | 2421026 ~ 2423527 (+) |
| CI01000034_02550332_02552258 | NA | coding | downstream | 596973 | 2550332 ~ 2552839 (+) |
| G169616 | NA | non-coding | upstream | 125 | 1952495 ~ 1952784 (+) |
| G169606 | NA | non-coding | upstream | 543 | 1950430 ~ 1952366 (+) |
| G169620 | NA | non-coding | upstream | 42845 | 1894480 ~ 1910064 (+) |
| G169611 | NA | non-coding | upstream | 122018 | 1827583 ~ 1830891 (+) |
| G169636 | NA | non-coding | downstream | 30438 | 1983797 ~ 1984917 (+) |
| G169653 | NA | non-coding | downstream | 49462 | 2002821 ~ 2003253 (+) |
| G169656 | NA | non-coding | downstream | 51709 | 2005068 ~ 2005440 (+) |
| G169677 | NA | non-coding | downstream | 121337 | 2074696 ~ 2074909 (+) |
| G169696 | NA | non-coding | downstream | 137046 | 2090405 ~ 2090648 (+) |
| CI01000034_01729413_01730790 | EVE1 | other | upstream | 221732 | 1729413 ~ 1731179 (+) |
| G169340 | NA | other | upstream | 642031 | 1250219 ~ 1310878 (+) |
| G169394 | NA | other | upstream | 759349 | 1150297 ~ 1193560 (+) |
| G169357 | NA | other | upstream | 833890 | 1053543 ~ 1119019 (+) |
| G169309 | NA | other | upstream | 982988 | 969261 ~ 969921 (+) |
| G169806 | NA | other | downstream | 364614 | 2317973 ~ 2337690 (+) |
| CI01000034_03432846_03437608 | NDUFA4, NDUFA4L | other | downstream | 1480777 | 3432846 ~ 3438839 (+) |
| CI01000034_04125435_04125780 | RPRML | other | downstream | 2171741 | 4125100 ~ 4126825 (+) |
| CI01000034_04192675_04200041 | NA | other | downstream | 2241279 | 4192311 ~ 4200636 (+) |
