Gene
RNA
| Item | Value |
|---|---|
| gene id | G176649 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000037 |
| NCBI id | null |
| chromosome length | 4612320 |
| location | 3909615 ~ 3909911 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU200643 | True | 297 | lncRNA | 0.63 | 1 | 3909615 | 3909911 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000037_03901647_03902747 | NA | coding | upstream | 6868 | 3899399 ~ 3902747 (+) |
| CI01000037_03875808_03891566 | NA | coding | upstream | 17228 | 3875488 ~ 3892387 (+) |
| CI01000037_03855991_03860283 | UBE2A.L, UBE2A, UBE2B, UBE2AL, BRAFLDRAFT_128294 | coding | upstream | 48314 | 3855991 ~ 3861301 (+) |
| CI01000037_03824405_03854894 | ANKRD10B | coding | upstream | 54421 | 3824208 ~ 3855194 (+) |
| CI01000037_03811261_03823037 | CARKD | coding | upstream | 86500 | 3811261 ~ 3823115 (+) |
| CI01000037_03946645_03954021 | SIK1 | coding | downstream | 36084 | 3945995 ~ 3954314 (+) |
| CI01000037_04050140_04050646 | NA | coding | downstream | 139254 | 4049165 ~ 4050883 (+) |
| CI01000037_04061560_04065802 | NA | coding | downstream | 151649 | 4061560 ~ 4066041 (+) |
| CI01000037_04080145_04081691 | NA | coding | downstream | 168570 | 4078481 ~ 4082806 (+) |
| CI01000037_04168194_04170478 | NA | coding | downstream | 258283 | 4168194 ~ 4171137 (+) |
| G176636 | NA | non-coding | upstream | 40610 | 3868798 ~ 3869005 (+) |
| G176635 | NA | non-coding | upstream | 41185 | 3868213 ~ 3868430 (+) |
| G176633 | NA | non-coding | upstream | 42495 | 3866842 ~ 3867120 (+) |
| G176554 | NA | non-coding | upstream | 352233 | 3557182 ~ 3557382 (+) |
| G176510 | NA | non-coding | upstream | 363865 | 3545289 ~ 3545750 (+) |
| G176652 | NA | non-coding | downstream | 4039 | 3913950 ~ 3915351 (+) |
| G176519 | NA | non-coding | downstream | 21070 | 3930981 ~ 4010044 (+) |
| G176672 | NA | non-coding | downstream | 109536 | 4019447 ~ 4019931 (+) |
| G176673 | NA | non-coding | downstream | 110536 | 4020447 ~ 4020837 (+) |
| G176679 | NA | non-coding | downstream | 123344 | 4033255 ~ 4033487 (+) |
| G176377 | NA | other | upstream | 821647 | 2976862 ~ 3087968 (+) |
| G176346 | NA | other | upstream | 1069562 | 2839760 ~ 2840053 (+) |
| CI01000037_01965864_01966433 | COA5, CB064 | other | upstream | 1939224 | 1965603 ~ 1966435 (+) |
| G174949 | NA | other | upstream | 2295341 | 1613876 ~ 1614274 (+) |
| CI01000037_04213179_04218057 | NA | other | downstream | 303372 | 4212907 ~ 4218305 (+) |
