XLOC_009167 (rnaset2l)


Basic Information

Item Value
gene id XLOC_009167
gene name rnaset2l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 20395309 ~ 20400438 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018033
ACAGACTCTCAGAACAGACGGATCAGCATGACCTACAATAAACACATTCTCTGGGCCTTTACCGCTGCTCTGGCCACAGGCTGGGTCCTTAGTAATGATGAAGGATGCTATTATGGGACTGTCATGAAGCACTCATGCAACTGGACTTGTATGCTGCTCACTCTTCAATGGCCTGGAAGTTTCTGTATAGGTCTTACTAATAAAACGATTTGCAAAATACCACTGACTATTCAAAACTGGACCATCCATGGCCTATGGCCGATGCATACAGGTCACTGCTGTAACTGTTGGCCAATATTTCATTCCCACCTTCagGAAATCGAGCCAGAACTCACTCAGCTGTGGCCATCTTTAATAAAAGGAAAGCATTTCTTCAACTTTTGGAGGGAGGAATGGATTAAACACGGGACGTGTGCTGGCTGTGACGGGGCCATGGGTTCACCGCTACTTTACTTCCAGGCTGCAGTCAAGCTTCGAAAACTCTTTGACATTAATAGCGTCTTGGAAAGCTCTGGAATCAAAGCCTCATGTGAGGTGTCCTATAAGTATGACGACATAAGCAAGGCCCTGACCTCACTGCTGGGAGACAACTTTGATTTGCAATGTGTGACAGACAGTAAGGGTCGTGAAGCATGGATCCAGCTGAAGATCCATCTTTCGAGGAACCAAACCATTGGATGCCCCACAGAGAAGCAAGACGAAGCATTCTATAATTTAGCGTGGTATAAAAGCCCTGGACATCCTTGTCCGAAGAACACCACCATCTTTTTTGTCCCAATTAACTATGACAACCCTCATGAGCCATGTAACTAAGAGAAGCCACATCATTTCACTTAAGCTAAAACTATAGACATGTACACATTTGACCATTGTGTTCTACTTTACAGCTGTGTTCTGAATAAAATCAAATTCAACTTTG
>TCONS_00018034
ATTAGCCACTGTGTCACAGACTCTCAGAACAGACGGATCAGCATGACCTACAGTAAGAATCTACCTGAATACTCATGCAACTGGACTTGTATGCTGCTCACTCTTCAATGGCCTGGAAGTTTCTGTATAGGTCTTACTAATAAAACGATTTGCAAAATACCACTGACTATTCAAAACTGGACCATCCATGGCCTATGGCCGATGCATACAGGTCACTGCTGTAACTGTTGGCCAATATTTCATTCCCACCTTCagGAAATCGAGCCAGAACTCACTCAGCTGTGGCCATCTTTAATAAAAGGAAAGCATTTCTTCAACTTTTGGAGGGAGGAATGGATTAAACACGGGACGTGTGCTGGCTGTGACGGGGCCATGGGTTCACCGCTACTTTACTTCCAGGCTGCAGTCAAGCTTCGAAAACTCTTTGACATTAATAGCGTCTTGGAAAGCTCTGGAATCAAAGCCTCATGTGAGGTGTCCTATAAGGGTCGTGAAGCATGGATCCAGCTGAAGATCCATCTTTCGAGGAACCAAACCATTGGATGCCCCACAGAGAAGCAAGACGAAGCATTCTATAATTTAGCGTGGTATAAAAGCCCTGGACATCCTTGTCCGAAGAACACCACCATCTTTTTTGTCCCAATTAACTATGACAACCCTCATGAGCCATGTAACTAA
>TCONS_00018035
TCACAGACTCTCAGAACAGACGGATCAGCATGACCTACAGTAAGAATCTACCTGAATAGCTATATAACCTctgtttaaatgcatatttactgTAACAATCTGTATTGTTTTAGATAAACACATTCTCTGGGCCTTTACCGCTGCTCTGGCCACAGGCTGGGTCCTTAGTAATGATGAAGGATGCTATTATGGGACTGTCATGAAGCACTCATGCAACTGGACTTGTATGCTGCTCACTCTTCAATGGCCTGGAAGTTTCTGTATAGGTCTTACTAATAAAACGATTTGCAAAATACCACTGACTATTCAAAACTGGACCATCCATGGCCTATGGCCGATGCATACAGGTCACTGCTGTAACTGTTGGCCAATATTTCATTCCCACCTTCagGAAATCGAGCCAGAACTCACTCAGCTGTGGCCATCTTTAATAAAAGGAAAGCATTTCTTCAACTTTTGGAGGGAGGAATGGATTAAACACGGGACGTGTGCTGGCTGTGACGGGGCCATGGGTTCACCGCTACTTTACTTCCAGGCTGCAGTCAAGCTTCGAAAACTCTTTGACATTAATAGCGTCTTGGAAAGCTCTGGAATCAAAGCCTCATGTGAGGTGTCCTATAAGTATGACGACATAAGCAAGGCCCTGACCTCACTGCTGGGAGACAACTTTGATTTGCAATGTGTGACAGACAGTAAGGGTCGTGAAGCATGGATCCAGCTGAAGATCCATCTTTCGAGGAACCAAACCATTGGATGCCCCACAGAGAAGCAAGACGAAGCATTCTATAATTTAGCGTGGTATAAAAGCCCTGGACATCCTTGTCCGAAGAACACCACCATCTTTTTTGTCCCAATTAACTATGACAACCCTCATGAGCCATGTAAC

Function

symbol description
rnaset2l Predicted to enable endoribonuclease activity. Predicted to be involved in RNA catabolic process. Predicted to be located in lysosomal lumen. Predicted to be active in extracellular region. Is expressed in several structures, including blastomere; eye; gonad; heart; and immature eye.

GO:

id name namespace
GO:0006401 RNA catabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0033897 ribonuclease T2 activity molecular_function
GO:0004521 endoribonuclease activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090819-2 Predicted to enable endoribonuclease activity. Predicted to be involved in RNA catabolic process. Predicted to be located in lysosomal lumen. Predicted to be active in extracellular region. Is expressed in several structures, including blastomere; eye; gonad; heart; and immature eye.

Ensembl:

ensembl_id ENSDARG00000058413

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018033 False 919 mRNA 0.44 10 20395309 20400423
TCONS_00018034 False 678 mRNA 0.45 8 20395415 20400438
TCONS_00018035 True 886 mRNA 0.44 9 20395418 20400425

Neighbor

gene id symbol gene type direction distance location
XLOC_009165 CR626887.3 coding downstream 14210 20340022 ~ 20381099 (-)
XLOC_009166 CR626887.2 coding downstream 49577 20344912 ~ 20345732 (-)
XLOC_009164 NA coding downstream 113516 20253743 ~ 20281793 (-)
XLOC_009163 AL928724.1 coding downstream 155711 20238428 ~ 20239598 (-)
XLOC_009162 ppp1r14ab coding downstream 162204 20204628 ~ 20233105 (-)
XLOC_009168 chp2 coding upstream 5705 20406143 ~ 20412286 (-)
XLOC_009169 dlc coding upstream 63010 20463448 ~ 20468302 (-)
XLOC_009170 timm50 coding upstream 75256 20475694 ~ 20528494 (-)
XLOC_009171 tpst1 coding upstream 252248 20652686 ~ 20781116 (-)
XLOC_009172 CR848784.4 coding upstream 397690 20798128 ~ 20799830 (-)
XLOC_009158 CR848757.1 non-coding downstream 462461 19929495 ~ 19932848 (-)
XLOC_009157 NA non-coding downstream 601698 19784491 ~ 19793611 (-)
XLOC_009173 CR848784.5 non-coding upstream 409271 20809709 ~ 20811411 (-)
XLOC_009174 CR848784.2 non-coding upstream 427983 20828421 ~ 20830125 (-)
XLOC_009178 BX548078.1 non-coding upstream 559631 20960069 ~ 20978248 (-)
XLOC_009180 CR626907.2 non-coding upstream 679388 21079826 ~ 21109608 (-)

Expression


Co-expression Network