CI01000040_01579092_01597460 (TMLHE)


Basic Information

Item Value
gene id CI01000040_01579092_01597460
gene name TMLHE
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 1579012 ~ 1598480 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000040_01579092_01597460.mRNA
GAATAAAACGGGTGAGGGTATTGTTGACTGCATTTGTTGCTGACTAATACATTATGTGCACGTGCGTTTTGCAGGCCACCATGCCCTTAATGCGAATGTTGAACAGACTGAGTGGATATGTTCACTGGAAACAAGGTTTGGAGTGTTTGGGAGCCAGATTACAGCACACTGCTGCCCATTCATCTGCATGCAACTATCAGCTGCTGCCTGACTGCTTAGAGCTCAAGTATGGTGGTCTCGTAATGCACTTTGACTATGTTTGGCTGAGAGACCACTGCCGCTCAGCTTCATGCTACAACTCAAAAACCAACCAGCGAAACCTGGACACTGCCAGCATCGATCTGAACATCAGGCCTTCAAAGAGCAGAGTGGACGAACACAACCTCTTCTTGACATGGCCAGATGGTCATGTCACACGGTACAACCTAGCATGGCTGGCCCAGAACAGCTATGAGGGCCAGAAGAAAAGTGCCATGCAACCTCGTATCCTGTGGAACGCAGATATCTACTCCAGTGCTAAGGTGCCCGCTGCCAGTTGGGACAAGTTCATGAGCTGCGACGAGGAGCTGAAGAACTTCCTCAACAACTTCCTGCTTTATGGAATTGCCTTTGTCGAAGGCGTCCCACCAACCCTAGAAGCTACAGAAACAGCGACTCAAAGAGTGAGCCTCATCAGAGAGACCATGTATGGGCGGATGTGGAACTTCACTTCAGATTTCTCGCGTGGAGATACAGCCTACACAAAGCTGGCTCTGGACCGCCACACCGACACGTCATACTTTCAAGAACCCTGCGGCATCCAGGTGTTTCACTGTCTGAGACATGAAGGTACGGGTGGCAGAACTCTGCTGGTGGACGGCTTCCACGCCGCTGACACGGTCCTCCAGCGAACGCCCGAGAACTTCGAGCTGCTTTCCCATGTGCCAATCAAGCATGAGTACGTTGAGAACCTGAGTGAGCATCGCAACCACATGATCGGCATCGGCCCCGTGCTCAATGTTTATCCGTGGAACAACGAGGTTTACATGATTCGGTATAATAACTATGACCGTTCTGTTATTAACACAGTCCCTCATGATGTGGTGCGGCGCTGGTACTCGGCTCACAGGCAGCTGAGCACAGAACTGAGGGGACCAGAGAATGAGCTGTGGGTCAAACTCAAACCAGGCAAGGTCCTGTTCATTGATAACTGGCGCGTTCTGCATGGCAGAGAGTCGTTCACCGGCCTGAGGCAGCTGTGCGGCTGTTATCTGACGCGTGATGATGTGCTGAACACTGCTCGCTCTCTGGGGCTCCGCGCCTGAGGACAGCGCTACACCGTCATTCTGCAAAAACGAGTTTATAACTCAAGCATTAGGATGGGAGAGGACACCTGATTTACAGCATACATCAGGATCACAACAGTGTTGCTCTTTGAAATTATTCACATAGCTCAAAATTTACTATTTTTTTTTTTTTGTAGTGGATGAAAATCCAAAATGCTTTCTTTCCACAGAAAACCAAATAGTAGTAATCAAAGGAGCTGTATGTAGCCTAATTATTTTGACTGAACAACATAAAAATATGTTTGTAGAGATTTAGGAACTTCTCAGAAAAACAATGCTACAGCCAGTTATTCCATTTTTGAAATGTGATGTGCGTTCCATGTGGGAATGTCTGTTTTTGTTTTGGTCTGTGTGGTCCCGCCCACTGCCAATTTACCCAATAGTGTTTCAACACCCCGGGTTGCCAGTCGGCGGAAAACGCAGCGTATTGCAGCTATGGAAGCCAGTGGAAGAACTGGGTCAGAGATTGCAGATTCTACAAGACCTAAAAATCCTCTGAATCCATCTAAAAAGTCTGTGACCAAAGACATTTTAAAACACAGATATGTTAGCTTGTCGCTTTTCATTGTCAATTGCTCTCGTTCCTGTTGCGTGTCCTTAATCTGGCAACCCGCGTGAGCGTCGAGTCTGAGGAGGAGCGGGCGAGAAAAACAACTCTGCAATATTTTGAAGTTGGACTGCAGTACCTATTTCAACCACTAGCTGTCAATATTTAATACTGCACAGAAGATCCTTAGTTTCACAAAAACGTCTGAATCATAGAAATGTCTTAAAATGTTTGTAAATACAGGGTATTCCTATGGGTTTGTGCCTTAACAGTGATATGAGAATGCATGTTTGAGATAATGGCAAAGATCTCACAAAGTTTAAATATATTCTGCAATAATCTAATTCATGTTATATGTATCTTTTAATTTGTAGCATTTTAACATCCTGTAGCCTATATAAAATGATCTCAAATGAATGTACGCACAAAAATACCAATGTTACCTCTAGAAA

Function

symbol description
tmlhe Predicted to enable iron ion binding activity and trimethyllysine dioxygenase activity. Predicted to be involved in carnitine biosynthetic process. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in autistic disorder. Orthologous to human TMLHE (trimethyllysine hydroxylase, epsilon).

GO:

id name namespace
GO:0031418 L-ascorbic acid binding molecular_function

KEGG:

id description
K00474 TMLHE; trimethyllysine dioxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000040_01579092_01597460.mRNA True 2324 mRNA 0.46 7 1579012 1598480

Neighbor

gene id symbol gene type direction distance location
CI01000040_01553258_01557964 NA coding upstream 18845 1553258 ~ 1560167 (+)
CI01000040_01540821_01545220 NA coding upstream 33752 1540754 ~ 1545260 (+)
CI01000040_01539717_01540595 NA coding upstream 38363 1539590 ~ 1540649 (+)
CI01000040_01535182_01539109 NA coding upstream 39552 1535100 ~ 1539460 (+)
CI01000040_01490929_01498480 NA coding upstream 80515 1490894 ~ 1498497 (+)
CI01000040_01604128_01609619 DKC1, DKC1.L coding downstream 5648 1604128 ~ 1609714 (+)
CI01000040_01706518_01706939 NA coding downstream 108038 1706518 ~ 1707234 (+)
CI01000040_01707444_01725985 NA coding downstream 108801 1707281 ~ 1725985 (+)
CI01000040_01728828_01731709 KIF4A coding downstream 129292 1727772 ~ 1732232 (+)
CI01000040_01760148_01802721 AMMECR1 coding downstream 161668 1760148 ~ 1803002 (+)
G184161 NA non-coding upstream 48757 1524233 ~ 1530255 (+)
G184127 NA non-coding upstream 138231 1440559 ~ 1440781 (+)
G184124 NA non-coding upstream 141719 1436940 ~ 1437293 (+)
G184117 NA non-coding upstream 153510 1425098 ~ 1425502 (+)
G184112 NA non-coding upstream 185470 1372172 ~ 1393542 (+)
G184198 NA non-coding downstream 2516 1600996 ~ 1601249 (+)
G184199 NA non-coding downstream 3234 1601714 ~ 1601944 (+)
G184187 NA non-coding downstream 24069 1622549 ~ 1634932 (+)
G184229 NA non-coding downstream 90976 1689456 ~ 1689667 (+)
G184231 NA non-coding downstream 92942 1691422 ~ 1691759 (+)
G184003 NA other upstream 342523 1230292 ~ 1236489 (+)
CI01000040_00977184_00977458 NDUA2, NDUFA2 other upstream 600849 977184 ~ 978163 (+)
CI01000040_00240852_00305487 GABRB2 other upstream 1302157 240849 ~ 313275 (+)
G183420 NA other upstream 1414090 157543 ~ 164922 (+)
G183366 NA other upstream 1518615 53691 ~ 60397 (+)
G185296 NA other downstream 1735098 3333578 ~ 3333983 (+)
G185884 NA other downstream 2140507 3738987 ~ 3739281 (+)
G185947 NA other downstream 2375285 3973765 ~ 3974123 (+)
G187510 NA other downstream 4370565 5969045 ~ 5971732 (+)
G188149 NA other downstream 5210211 6808691 ~ 6809130 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019188 tmlhe coding NC_007132.7 CM002905.2 43669943 ~ 43695816 (+)