G183366


Basic Information

Item Value
gene id G183366
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 53691 ~ 60397 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU208230
GTTGCTTGCTATCTGGGTATGCTCAATTTATGTATGAGAGGAGTAATTCACAATTAAAAAAGTACATTTACCTTAAAGTATACAGTATCCGCCCATCGTTCCATATCCGAAGCATCCGATTGGGTGTGGTGATCCAATGGGCATCTGCCTTCTTGGAGTTGCGGAAAAATGTGTCAGGGATCCAGATTTTTCCTACCATGTTGCTGTTGAGACGTAGAACTTTCATAGTGCTGTTAAACTTCAACCGCCTGTCATACCACGTCTGGGCGAAGAAGATGTCAATAGTGTACTCCATGTTGATGGCATTTACTGGGCCAATACTGTTGACAAACATGTCTGTATGGATCACGGTTGGTTTGACT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU208230 True 362 TUCP 0.43 2 53691 60397

Neighbor

gene id symbol gene type direction distance location
CI01000040_00178642_00181455 NA coding downstream 118207 178604 ~ 182404 (+)
CI01000040_00240852_00305487 GABRB2 coding downstream 180455 240849 ~ 313275 (+)
CI01000040_00347516_00350540 NA coding downstream 287119 347516 ~ 350601 (+)
CI01000040_00366809_00384965 NA coding downstream 306312 366709 ~ 385259 (+)
CI01000040_00512880_00513451 NA coding downstream 452483 512880 ~ 513597 (+)
G183370 NA non-coding upstream 5415 19599 ~ 48276 (+)
G183386 NA non-coding downstream 17951 78348 ~ 81976 (+)
G183419 NA non-coding downstream 71385 131782 ~ 178924 (+)
G183433 NA non-coding downstream 110912 171309 ~ 173835 (+)
G183438 NA non-coding downstream 122070 182467 ~ 182743 (+)
G183420 NA other downstream 97146 157543 ~ 164922 (+)
CI01000040_00977184_00977458 NDUA2, NDUFA2 other downstream 913716 977184 ~ 978163 (+)
G184003 NA other downstream 1169895 1230292 ~ 1236489 (+)
G185296 NA other downstream 3273181 3333578 ~ 3333983 (+)

Expression


Co-expression Network