CI01000040_05264252_05286787 (SYRC, RARS)


Basic Information

Item Value
gene id CI01000040_05264252_05286787
gene name SYRC, RARS
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 5263716 ~ 5286870 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000040_05264252_05286787.mRNA
ATATAAAAATGTATTCCAAAATTGCATATATGCATAAATATTTAAGTATTTTTGAGAGCGTATATAGCTGACGCGATTTACTTGTTGGACTCTCTGATTGGTGGAGATTTCTCTGCAGAATCATGGGTAATGTAGTTTCTCACCATGATTCCCGATTATTTAAAAAAATTTAAATAGTGTAAGCTGATGGCTTTAACAGAAATATATACCATCGATTAACAACTACGTTGCTCACAGTATATCTTTTTTAAAATGTTTGTAAGTTATCGTTCAAAATGAATTCCTCTATGAAGAAAATGAATGGGATTTTTTTAACTTCCGGAACACGACTGCTGCACTCATATGGGACCACGAATCGTTCAGACCAGTTTTATGAACCAGTTCAACTGATCCAACTCACACGAAGATTTGTTCAACAAATCGGTAACTGATAATCGGAAGTGACGTGCTGAAGCCGGTGAAAGTGGTTCTTCGCGTTGGAGAAGTGAACATTTTTCAGAATTTGTGCCTGTTTGCACCTCACTTTATCCGAAAAAATGGGTGATCCCGTTGCCGAGCACACGTCCCGACTTCAGCGACAGGAAAGAGAAATCAAGTTACTCCAAGACGAAATCGAGAGGCTGAGAGATCCACAGCAGCTGAACTTCACGTCTTCACAGCTGGATGTGTTGCGCGAGGAGAATTCCCGTCTGAAGTACCGCCTCAACATCCTGAAAACAAGTTTACAGGAGGAGATGAGCCAAAACGGCAAGACGATGTTGAACATCAACCAGCGTTTGCAGCAGATCTTTGGAGAGGCCATCAGTACCGCCTACCCTGACTTAGAGAACCCGCCACATGTGGTCACCCCCAACCAGCAGGCCAAGTTTGGCGATTATCAGTGTAACAGTGCCATGGCGATGTCTCAGATGATGAAAGCTAAAGGACAGAAGGTCAGCCCCAGGGAGATAGCAGAGAAGATTGTCCAAAACATTCCAAACAATGAGTTAATTGAGAGAACAGAAATCGCAGGGCCAGGGTTTATCAACATTCATCTCAAGAGAATGTTTGTCTCTAAACTTCTCTCAAACCTGCTTGTGAATGGAGTTCAGCCTCCACCGTTGGAGAAGAAAAAGAAGGTCATTGTGGACTTCTCCTCACCTAACATTGCCAAAGAGATGCATGTTGGTCACCTGCGGTCCACCATTATTGGAGATAGCATGTGTCGACTCTTTGAGTTCCTGGGTTATGAAGTGCTAAGGTTGAACCATGTTGGAGACTGGGGGACACAGTTTGGGATGCTCATTGCTCATTTGCAAGACAAGTTCCCAAATTATCTCAGTGTTTCCCCGCCTATCAGTGACCTTCAGGCTTTCTACAAAGAGTCTAAGAAGAGGTTTGATGAGGATGAAGAGTTTAAGAAGAGGGCCTACCAGTGTGTGGTTAAACTCCAGAGCAAAGAGCCAGACTTCATCAAAGGCTGGAACCTCATCTGTGACGTTTCCCGGAATGAGTACTATGCATACAGGCACATCTACTCAGGTGGCCTTCCCTCAAATTTCTCTAATGGGATTGAAGCCCAAAAGTGCACACTGACCAAATTTAGGATGCCACGTGAGACCGAACTTTTTGGAGACGAGTTTCAAAAGATCTACGACTGCCTGGAAATTCGCATAGAAGAGAGAGGAGAGTCCTACTACCAGGACATGATGACGGCTGTGGTGAAAGAGTTTGAGGAAAAAGGGCTGGTGGAGTTGGACGAGGGCAGGAAGATAGTGTTTGCTCCGGGCCAGTCTATTCCCCTGACGATTGTCAAATCAGATGGTGGCTATACTTACGATACCTCCGATCTGGCTGCCATCAAAAATCGTCTGTTTGACGAGAAAGCTGACATCATCATCTACGTGACCGACAGTGGCCAGTTGATAGGCTGGTATGATCCCAAGGTCACACGGGTAGAACATGCGGGTTTTGGTGTGGTGCTCGGGGAGGACAAGAAAAAGTTTAAGACGCGTTCAGGGGACACAGTGCGATTAATGGACCTTCTGGAGGAGGGTCTGAAAAGATCCATGGACAAACTGAAGGAGAAGGAGAGAGACAAGGTGCTGACCCCGGAGGAGCTGGTAAAGGCTCAGCGTGCCGTGGCCTTTGGCTGCATTAAATATGCAGACCTTTCACACAACCGCATCAATGACTACGTATTTTCCTTCGACAAGATGCTGGATGACAGGGGCAACACCGCGGCCTACCTCCTCTACGCCTTCACACGCATCAGTATTGACCCATCTTCACCTGCTTCAGGTGAGGTCTTCTGGGGTTTGATATACCCCTTCTGGGACATCTTTATGTGGGTCTGTGCTGGAAACGGTGGCCTGATTGATTCCCACATGGGTGTTGTAACTGTGCTGCTGTTTGGAAATGATCTACTTCTGCTGTCGCCCGAGTGGATGCTCGGCACAAGTGCTCTATTATTCTCACTCTTTATCACCTTGTGTATGCTCTTCTGTCTCAGTAGGGCTGTTGACCTGATGTCAGGAGCGTCTATAGCTAGACTGGCTAACATCCAGGAGGATGTCCTGCGCAAAGCAGCCGAGACCACAGAGGTCTTACTGGACCATGAGAAAGAGTGGAAACTGGGTAAGTGCATCCTGCGCTTCCCTGAGATTCTGCAGAAGATCACAGACGACCTGCTGCTTCACACACTGTGCGACTACCTCTACGAGCTGGCCACCACCTTCACAGAGTTCTACGACAGCTGCTACTGCGTGGAGAAGGACCGGCAGACAGGGGAAGTGGTCAAAGTCAACATGTGGCGGATGCTCCTCTGTGAAGCCACCGCAGCTGTGATGGCCAAAGGTTTTGACATTCTGGGTATCAATCCAGTTCAGAGGATGTGAATTGGTCAATGCCTTCCTTCTCTGAACACAAGACCTTTTACACAAAAACATTGATGTCCCGACGGATTCTTATGGTATACCAA

Function

symbol description
rars Enables arginine-tRNA ligase activity. Involved in arginyl-tRNA aminoacylation. Located in mitochondrion. Part of aminoacyl-tRNA synthetase multienzyme complex. Is expressed in several structures, including alimentary system; genitourinary system; nervous system; respiratory system; and sensory organ. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy 9. Orthologous to human RARS1 (arginyl-tRNA synthetase 1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K01887 RARS, argS; arginyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000040_05264252_05286787.mRNA True 2959 mRNA 0.47 19 5263716 5286870

Neighbor

gene id symbol gene type direction distance location
CI01000040_05230946_05238111 NA coding upstream 25590 5230946 ~ 5238126 (+)
CI01000040_05211970_05223021 UBTD2 coding upstream 40095 5211970 ~ 5223621 (+)
CI01000040_05104703_05110165 KDELC2 coding upstream 152618 5104564 ~ 5111098 (+)
CI01000040_05088429_05089430 NA coding upstream 173312 5086249 ~ 5090404 (+)
CI01000040_05047319_05069572 NA coding upstream 194031 5047171 ~ 5069685 (+)
CI01000040_05335852_05356848 NA coding downstream 47540 5334410 ~ 5358334 (+)
CI01000040_05552982_05558809 NA coding downstream 264816 5551686 ~ 5559364 (+)
CI01000040_05709800_05729451 NA coding downstream 422930 5709800 ~ 5729458 (+)
CI01000040_05782367_05787040 NA coding downstream 495497 5782367 ~ 5788202 (+)
CI01000040_05794612_05852452 NA coding downstream 507519 5794389 ~ 5852599 (+)
G186855 NA non-coding upstream 4367 5254033 ~ 5259349 (+)
G186842 NA non-coding upstream 21081 5242328 ~ 5242635 (+)
G186839 NA non-coding upstream 23259 5239934 ~ 5240457 (+)
G186785 NA non-coding upstream 77028 5182644 ~ 5186688 (+)
G186815 NA non-coding upstream 109908 5153510 ~ 5153808 (+)
G186879 NA non-coding downstream 31930 5318800 ~ 5389295 (+)
G186913 NA non-coding downstream 68672 5355542 ~ 5356188 (+)
G186923 NA non-coding downstream 94720 5381590 ~ 5383813 (+)
G186937 NA non-coding downstream 103830 5390700 ~ 5391008 (+)
G185947 NA other upstream 1289593 3973765 ~ 3974123 (+)
G185884 NA other upstream 1524435 3738987 ~ 3739281 (+)
G185296 NA other upstream 1929733 3333578 ~ 3333983 (+)
G184003 NA other upstream 4027227 1230292 ~ 1236489 (+)
CI01000040_00977184_00977458 NDUA2, NDUFA2 other upstream 4285553 977184 ~ 978163 (+)
G187510 NA other downstream 682175 5969045 ~ 5971732 (+)
G188149 NA other downstream 1521821 6808691 ~ 6809130 (+)
CI01000040_06833701_06848731 NA other downstream 1551254 6832987 ~ 6849135 (+)

Expression


Co-expression Network