Gene
RNA
| Item | Value |
|---|---|
| gene id | G186855 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000040 |
| NCBI id | null |
| chromosome length | 6879596 |
| location | 5254033 ~ 5259349 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU212210 | False | 856 | lncRNA | 0.41 | 8 | 5254033 | 5259349 |
| TU212212 | True | 574 | lncRNA | 0.41 | 5 | 5254033 | 5256148 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000040_05230946_05238111 | NA | coding | upstream | 15907 | 5230946 ~ 5238126 (+) |
| CI01000040_05211970_05223021 | UBTD2 | coding | upstream | 30412 | 5211970 ~ 5223621 (+) |
| CI01000040_05104703_05110165 | KDELC2 | coding | upstream | 142935 | 5104564 ~ 5111098 (+) |
| CI01000040_05088429_05089430 | NA | coding | upstream | 163629 | 5086249 ~ 5090404 (+) |
| CI01000040_05047319_05069572 | NA | coding | upstream | 184348 | 5047171 ~ 5069685 (+) |
| CI01000040_05264252_05286787 | SYRC, RARS | coding | downstream | 4367 | 5263716 ~ 5286870 (+) |
| CI01000040_05335852_05356848 | NA | coding | downstream | 75061 | 5334410 ~ 5358334 (+) |
| CI01000040_05552982_05558809 | NA | coding | downstream | 292337 | 5551686 ~ 5559364 (+) |
| CI01000040_05709800_05729451 | NA | coding | downstream | 450451 | 5709800 ~ 5729458 (+) |
| CI01000040_05782367_05787040 | NA | coding | downstream | 523018 | 5782367 ~ 5788202 (+) |
| G186842 | NA | non-coding | upstream | 11398 | 5242328 ~ 5242635 (+) |
| G186839 | NA | non-coding | upstream | 13576 | 5239934 ~ 5240457 (+) |
| G186785 | NA | non-coding | upstream | 67345 | 5182644 ~ 5186688 (+) |
| G186815 | NA | non-coding | upstream | 100225 | 5153510 ~ 5153808 (+) |
| G186769 | NA | non-coding | upstream | 178984 | 5074850 ~ 5075049 (+) |
| G186879 | NA | non-coding | downstream | 59451 | 5318800 ~ 5389295 (+) |
| G186913 | NA | non-coding | downstream | 96193 | 5355542 ~ 5356188 (+) |
| G186923 | NA | non-coding | downstream | 122241 | 5381590 ~ 5383813 (+) |
| G186937 | NA | non-coding | downstream | 131351 | 5390700 ~ 5391008 (+) |
| G185947 | NA | other | upstream | 1279910 | 3973765 ~ 3974123 (+) |
| G185884 | NA | other | upstream | 1514752 | 3738987 ~ 3739281 (+) |
| G185296 | NA | other | upstream | 1920050 | 3333578 ~ 3333983 (+) |
| G184003 | NA | other | upstream | 4017544 | 1230292 ~ 1236489 (+) |
| CI01000040_00977184_00977458 | NDUA2, NDUFA2 | other | upstream | 4275870 | 977184 ~ 978163 (+) |
| G187510 | NA | other | downstream | 709696 | 5969045 ~ 5971732 (+) |
| G188149 | NA | other | downstream | 1549342 | 6808691 ~ 6809130 (+) |
| CI01000040_06833701_06848731 | NA | other | downstream | 1578775 | 6832987 ~ 6849135 (+) |
