G187478


Basic Information

Item Value
gene id G187478
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 5782945 ~ 5787678 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU212899
TGTATTAGATTTCTCTAATACATAAAATAAGTAAGCTTGATCAGAGTTCTTGTGGGGAGAAGAATTTATTGAAGGTAGTAGTGTAGCACAGTTCTTCAGCATCGATGTCAGCGTCTCAGCCTTCAAAATATCTTAACCCAAAGTTCTGTCTGTGGGACAGAACTTTATACATGAAGACAAAAGGGCTACAAACAATAGAACACTGTTAGGACCTCCCACAGGAGATCGATCTACCCTGCAATCTACTCTGAGCAATGCTGTTTCTTTGTCATTCACACCCATCAGTTTCTGTGGGCCATACGTCTGTATGGGCCATTTGGTTCACACCTTTACAAACACAGACAGAGTTGATTGCATCTGAGGCACAGTCACAATGTAATTGCATCTAACTAAAGATAATGAAAATACACATAATCTTTCATACATAAAGCACTCAAATATGGTAAACGGAAGCTCAACCGTATGTGTTTGATGGGCGAGAACAAACCTCATTGGTTCTTGCAGAAGCTCAAATGTGCTGGAGTTGTTAGGGATATAGGGACCCGTTCATCTTTAGTTTCACTTTCATGGGCTTTCAGTTTTTTCATCAGACACTAATCTTCCACCACAGCTGCACATCATTTAGTTAGTTACCTCTGTGTATTTAGTTCCTCTGTGTTCAGTCTTTAGTTGTTGGTTGATGTGCGTGTACATGTTAGTGTTATGTTTATGCTCTCATGCACACTGTTACTCCTGCCTGCCTTCTAGTAAATAAAACCTAGTTTATATTTTGTAATCCTGTCCTCCGTCTGTCTTCATCATCTTCAGCTTTGTGACAGGAGTGACATGTGAGAATGATCCTGATTAGTTCTCGCTCATCAAGCAAGTAGACTTGAGCTCCCATTTACCAAATTTTAGTGCTCTATACGTTCACTGATCAATGCTTATATATGTTGTCACTTAATACAACATTGCATTTCAAGCTGACTAAACTTTTAAGGCAGCATGAACACTTACTTTAATTTTTCTTTTTTTTATATACATTTAGCATACATTTATACAACATTTTAAAATGTACAGTCTTTCTCTTCAATGAATTTTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU212899 True 1082 lncRNA 0.38 2 5782945 5787678

Neighbor

gene id symbol gene type direction distance location
CI01000040_05761106_05766999 NA coding downstream 15946 5759957 ~ 5766999 (-)
CI01000040_05422744_05511374 SGCD coding downstream 271571 5422605 ~ 5511374 (-)
CI01000040_05290906_05309503 NA coding downstream 473442 5289368 ~ 5309503 (-)
CI01000040_05254119_05259873 UBLCP1 coding downstream 522463 5254066 ~ 5260482 (-)
CI01000040_05246227_05249185 NA coding downstream 533760 5245465 ~ 5249185 (-)
CI01000040_05865054_05868808 MRPL22 coding upstream 77319 5864997 ~ 5868808 (-)
CI01000040_05909175_05910454 CNOT8, CNOT7 coding upstream 121036 5908714 ~ 5910454 (-)
CI01000040_05916108_05961765 WWC1 coding upstream 128194 5915872 ~ 5962028 (-)
CI01000040_05977984_05981590 NA coding upstream 189902 5977580 ~ 5982928 (-)
CI01000040_06066026_06096365 DBN1 coding upstream 278256 6065934 ~ 6096365 (-)
G187471 NA non-coding downstream 7430 5775149 ~ 5775515 (-)
G187430 NA non-coding downstream 13367 5689938 ~ 5769578 (-)
G187349 NA non-coding downstream 168255 5608579 ~ 5614690 (-)
G187345 NA non-coding downstream 259152 5522596 ~ 5523793 (-)
G187390 NA non-coding downstream 380342 5402240 ~ 5402603 (-)
G187490 NA non-coding upstream 13802 5801480 ~ 5801869 (-)
G187820 NA non-coding upstream 21014 5808692 ~ 5809042 (-)
G187827 NA non-coding upstream 47083 5834761 ~ 5859977 (-)
G187835 NA non-coding upstream 72760 5860438 ~ 5860651 (-)
G187836 NA non-coding upstream 73436 5861114 ~ 5861338 (-)
G187348 NA other downstream 217392 5562655 ~ 5565553 (-)
G187207 NA other downstream 496027 5264193 ~ 5286918 (-)
G185681 NA other downstream 2438065 3344475 ~ 3344880 (-)
G185593 NA other downstream 2790262 2992188 ~ 2992683 (-)
CI01000040_02595281_02596387 FGF1B other downstream 3186521 2594895 ~ 2596728 (-)
G188009 NA other upstream 553849 6341527 ~ 6342701 (-)
CI01000040_06423141_06425495 RBMX2 other upstream 635175 6422853 ~ 6425495 (-)
G188226 NA other upstream 915523 6703201 ~ 6783675 (-)

Expression


Co-expression Network