Gene
RNA
| Item | Value |
|---|---|
| gene id | G187345 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000040 |
| NCBI id | null |
| chromosome length | 6879596 |
| location | 5522596 ~ 5523793 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| uncharacterized protein LOC110502088 |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU212759 | True | 1006 | lncRNA | 0.47 | 2 | 5522596 | 5523793 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000040_05422744_05511374 | SGCD | coding | downstream | 11222 | 5422605 ~ 5511374 (-) |
| CI01000040_05290906_05309503 | NA | coding | downstream | 213093 | 5289368 ~ 5309503 (-) |
| CI01000040_05254119_05259873 | UBLCP1 | coding | downstream | 262114 | 5254066 ~ 5260482 (-) |
| CI01000040_05246227_05249185 | NA | coding | downstream | 273411 | 5245465 ~ 5249185 (-) |
| CI01000040_05129482_05130724 | ADRB2B | coding | downstream | 391872 | 5128744 ~ 5130724 (-) |
| CI01000040_05761106_05766999 | NA | coding | upstream | 236164 | 5759957 ~ 5766999 (-) |
| CI01000040_05865054_05868808 | MRPL22 | coding | upstream | 341204 | 5864997 ~ 5868808 (-) |
| CI01000040_05909175_05910454 | CNOT8, CNOT7 | coding | upstream | 384921 | 5908714 ~ 5910454 (-) |
| CI01000040_05916108_05961765 | WWC1 | coding | upstream | 392079 | 5915872 ~ 5962028 (-) |
| CI01000040_05977984_05981590 | NA | coding | upstream | 453787 | 5977580 ~ 5982928 (-) |
| G187390 | NA | non-coding | downstream | 119993 | 5402240 ~ 5402603 (-) |
| G187388 | NA | non-coding | downstream | 121591 | 5400738 ~ 5401005 (-) |
| G187376 | NA | non-coding | downstream | 131631 | 5390700 ~ 5390965 (-) |
| G187338 | NA | non-coding | downstream | 272807 | 5249571 ~ 5249789 (-) |
| G187330 | NA | non-coding | downstream | 282208 | 5240039 ~ 5240388 (-) |
| G187349 | NA | non-coding | upstream | 84786 | 5608579 ~ 5614690 (-) |
| G187430 | NA | non-coding | upstream | 166145 | 5689938 ~ 5769578 (-) |
| G187471 | NA | non-coding | upstream | 251356 | 5775149 ~ 5775515 (-) |
| G187478 | NA | non-coding | upstream | 259152 | 5782945 ~ 5787678 (-) |
| G187490 | NA | non-coding | upstream | 277687 | 5801480 ~ 5801869 (-) |
| G187207 | NA | other | downstream | 235678 | 5264193 ~ 5286918 (-) |
| G185681 | NA | other | downstream | 2177716 | 3344475 ~ 3344880 (-) |
| G185593 | NA | other | downstream | 2529913 | 2992188 ~ 2992683 (-) |
| CI01000040_02595281_02596387 | FGF1B | other | downstream | 2926172 | 2594895 ~ 2596728 (-) |
| G183972 | NA | other | downstream | 4689055 | 833140 ~ 833541 (-) |
| G187348 | NA | other | upstream | 38862 | 5562655 ~ 5565553 (-) |
| G188009 | NA | other | upstream | 817734 | 6341527 ~ 6342701 (-) |
| CI01000040_06423141_06425495 | RBMX2 | other | upstream | 899060 | 6422853 ~ 6425495 (-) |
| G188226 | NA | other | upstream | 1179408 | 6703201 ~ 6783675 (-) |
