G198477


Basic Information

Item Value
gene id G198477
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 4058110 ~ 4058940 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU225279
ACCGACTTGAAACGATCCTAGTCTAACAGGGCAAAGCTTCCTTAACATGATGACACAGTTTTCACCATTGGCAGGTGGAGGCTGTTTGAGGCCTAGCAGTGACTTGTATCTGAAAAGGAAGACATCGAATGGCATTCTGATCGGATAGCCCTCTCTCCTGATTCGAATGGTTTCTAAAATCCCAGAATAGTTAAGTTGGGCGCTGACCAGCTCCATGTCAAACACACCAGGCTCCTTGTTTTGGTTTGGCTTTATGCATCGCACAAAATATGGGTTGGCTCTGTTAGGGCAAGATGGAAAGAAGAATTTTATCACTTGGTGATAAAAAACTTACATGGGTCTGAAACCAATCACAGAAGAGATTCATGTAGACAGCATAATGCACAATTTAGGTGGTCTACCTCTCCATCTTTTCAATGAGCTCCATGAGGGATTGTTGGAACTTGGCCGCCACCGTTGAGGCCTGATGGCGCCGTGTTACTGTGCTGTTTTTCCCAACATGAGATCTCTGTTGGTTGAGGGCCTCAGCGTAGCTCATAAACAGATATGCAACCATCTGAAACCACAGCGAGATAAGGGTCAGCTTATTGGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU225279 True 593 lncRNA 0.46 3 4058110 4058940

Neighbor

gene id symbol gene type direction distance location
CI01000046_04021483_04023514 GFER coding downstream 34596 4020458 ~ 4023514 (-)
CI01000046_04013708_04017841 SYNGR3, SYNGR3A coding downstream 40269 4011908 ~ 4017841 (-)
CI01000046_03967726_03970443 NA coding downstream 87397 3967457 ~ 3970713 (-)
CI01000046_03951775_03952660 BUD31, BUD31.L, BRAFLDRAFT_113775 coding downstream 105067 3951181 ~ 3953043 (-)
CI01000046_03946243_03948935 CPSF4 coding downstream 108566 3946230 ~ 3949544 (-)
CI01000046_04125918_04128585 CCDC97 coding upstream 66947 4125887 ~ 4128585 (-)
CI01000046_04136250_04185791 CACNA1H, CACNA1HA coding upstream 76915 4135855 ~ 4185848 (-)
CI01000046_04279865_04297801 EPN2 coding upstream 220925 4279865 ~ 4297801 (-)
CI01000046_04329752_04335164 PRPSAP2 coding upstream 269944 4328884 ~ 4335164 (-)
CI01000046_04336982_04343632 NA coding upstream 277765 4336705 ~ 4344054 (-)
G198476 NA non-coding downstream 296 4057464 ~ 4057814 (-)
G198469 NA non-coding downstream 994 4049900 ~ 4057116 (-)
G198460 NA non-coding downstream 8370 4031795 ~ 4049740 (-)
G198457 NA non-coding downstream 26787 4030781 ~ 4031323 (-)
G198459 NA non-coding downstream 30172 4027654 ~ 4027938 (-)
G198481 NA non-coding upstream 5733 4064673 ~ 4067219 (-)
G198483 NA non-coding upstream 11153 4070093 ~ 4070693 (-)
G198485 NA non-coding upstream 15730 4074670 ~ 4078448 (-)
G198486 NA non-coding upstream 19781 4078721 ~ 4079777 (-)
G198487 NA non-coding upstream 21805 4080745 ~ 4081328 (-)
G198265 NA other downstream 258009 3665243 ~ 3800101 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other downstream 1190316 2866070 ~ 2867794 (-)
G196463 NA other downstream 1889466 2168266 ~ 2168644 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S other downstream 3277817 774434 ~ 780293 (-)
G195098 NA other downstream 3381982 670736 ~ 676128 (-)
G199054 NA other upstream 2038419 6097359 ~ 6097674 (-)
G199014 NA other upstream 2305238 6364178 ~ 6375406 (-)
G199130 NA other upstream 2519040 6577980 ~ 6594210 (-)
G199181 NA other upstream 2767745 6826685 ~ 6830453 (-)

Expression


Co-expression Network