Gene
RNA
| Item | Value |
|---|---|
| gene id | G198486 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000046 |
| NCBI id | null |
| chromosome length | 7063170 |
| location | 4078721 ~ 4079777 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU225290 | True | 1057 | lncRNA | 0.38 | 1 | 4078721 | 4079777 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000046_04021483_04023514 | GFER | coding | downstream | 55207 | 4020458 ~ 4023514 (-) |
| CI01000046_04013708_04017841 | SYNGR3, SYNGR3A | coding | downstream | 60880 | 4011908 ~ 4017841 (-) |
| CI01000046_03967726_03970443 | NA | coding | downstream | 108008 | 3967457 ~ 3970713 (-) |
| CI01000046_03951775_03952660 | BUD31, BUD31.L, BRAFLDRAFT_113775 | coding | downstream | 125678 | 3951181 ~ 3953043 (-) |
| CI01000046_03946243_03948935 | CPSF4 | coding | downstream | 129177 | 3946230 ~ 3949544 (-) |
| CI01000046_04125918_04128585 | CCDC97 | coding | upstream | 46110 | 4125887 ~ 4128585 (-) |
| CI01000046_04136250_04185791 | CACNA1H, CACNA1HA | coding | upstream | 56078 | 4135855 ~ 4185848 (-) |
| CI01000046_04279865_04297801 | EPN2 | coding | upstream | 200088 | 4279865 ~ 4297801 (-) |
| CI01000046_04329752_04335164 | PRPSAP2 | coding | upstream | 249107 | 4328884 ~ 4335164 (-) |
| CI01000046_04336982_04343632 | NA | coding | upstream | 256928 | 4336705 ~ 4344054 (-) |
| G198485 | NA | non-coding | downstream | 273 | 4074670 ~ 4078448 (-) |
| G198483 | NA | non-coding | downstream | 8028 | 4070093 ~ 4070693 (-) |
| G198481 | NA | non-coding | downstream | 11502 | 4064673 ~ 4067219 (-) |
| G198477 | NA | non-coding | downstream | 19781 | 4058110 ~ 4058940 (-) |
| G198476 | NA | non-coding | downstream | 20907 | 4057464 ~ 4057814 (-) |
| G198487 | NA | non-coding | upstream | 968 | 4080745 ~ 4081328 (-) |
| G198505 | NA | non-coding | upstream | 19383 | 4099160 ~ 4099620 (-) |
| G198515 | NA | non-coding | upstream | 163764 | 4243541 ~ 4244246 (-) |
| G198520 | NA | non-coding | upstream | 169311 | 4249088 ~ 4250325 (-) |
| G198522 | NA | non-coding | upstream | 175911 | 4255688 ~ 4255887 (-) |
| G198265 | NA | other | downstream | 278620 | 3665243 ~ 3800101 (-) |
| CI01000046_02866255_02867695 | MRM2, FTSJ2 | other | downstream | 1210927 | 2866070 ~ 2867794 (-) |
| G196463 | NA | other | downstream | 1910077 | 2168266 ~ 2168644 (-) |
| CI01000046_00777923_00780186 | RPC11, POLR3K, POLR3K.S | other | downstream | 3298428 | 774434 ~ 780293 (-) |
| G195098 | NA | other | downstream | 3402593 | 670736 ~ 676128 (-) |
| G199054 | NA | other | upstream | 2017582 | 6097359 ~ 6097674 (-) |
| G199014 | NA | other | upstream | 2284401 | 6364178 ~ 6375406 (-) |
| G199130 | NA | other | upstream | 2498203 | 6577980 ~ 6594210 (-) |
| G199181 | NA | other | upstream | 2746908 | 6826685 ~ 6830453 (-) |
