G198485


Basic Information

Item Value
gene id G198485
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 4074670 ~ 4078448 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU225288
TTGAGGAATACATAGCATATCAGTTCTTCCTCTGGTTGATAAATTCAGTATGTGATGTAAGATTAATGGCATTACATGGAGGGCAGGTAGAGCGAGTCCTTGGCACGATGTTGCAGAGCTGCCAGTTTTGACACTTGCTGAAACTGCTGCTCACTGGCCTTACCCTGTGGGACAACATTGAGCAGCCCTTTCAAGTAGTCCGGGGAACCTGATTGTAATGCATAGTCACTCCGAGCTCATTGTCAAACTTTAGTGGCTGCGTCCATATCACTCTTCGAAACCACAGACTGTAGTTGCTATCAATGCGTTCAGCCTCTGTAGCAACATCCAAGATGTACTCCCTTTTGTTTAGAGGGCGGACATTTTGACCTCTGTTTGTGACCACAAATACAGCATATTCATCCAAGGCTTCAAGTTTATGCAGACCCATCTCATAGCACAGCTCTTCAATGGCATCCAGAGCCACTGAGCAGGTTTTGATCTTTAGGTGGCGTTCAATTCCACCAGAAAGAAGAAACAATTGGCGCTTGGAGCTCCTTCCAGCCAGCATAGCTTTCAATTCCATCCCATTAGGATGCACAACACGTCCACCATATTGGAACGTCTTCCTTAGGTTCTGCTCACAAGCCTTGGCAATGCCTGTCAATGTATCGTGTTATTTGTATTCGTCAGTCAGTATGTAATCAGTTTGATCTGTGTAGCTGTAACACGTAGTTAAAACAGCAGTATACCTTGAAAGTGCACCCCAGGACTTGCACAGACATCCTGGAGGTATTTAAGCAGGTAAGGTTTGAGCGCCTCTGAACACTTGTAGTATGCAGTGAGGATGTACAGCAGCCTCCAGCCTCTCTGACAACTCTCCCTGTGAAACACAAGATCATCTTTTACTCTGCTCTGCAATGAGTCCTACAATGATTTGCTCATTCAGAAAAAAGCAGGCTTATACGTTTTGGAGCTGGTGTTCCCAGTGATCTGCTTGAGGACTTGGCAGTACGCTTCATCCTTCATTAGTCCATATTCGCCACTCAGCCTTAGGATGGTGCTGACAACGTCCTGCTCAGCCTGACCTTTCATAGGGTAGTCTCCCATAAACTTCATTATAGCAAGAAAAATCTCTGCAGCTACTCTGTTCATGTTTTCATCAGTGAACTCGATCAGGGACTCTTGAATTGGAGACTTGGAAAATTTCACCATTTCTGATGGTTCCCTGGATTCCTTTGTTTTCTTTGACTTTTTCTTATATGAATCACCGTTTTTTCTCTGGGCCCCCCTGAAATATTTCTTGGCAAACTCCACCATGTTGTATCGGCTGTCCTGCAAGATTCTCTCATCGATGTCCATATCAGCACTGTCTGTGTAGGCCTCTGCATACTCACTGACAGGAGACGCCACCTCAATGGATCGGTCCAGTTCATGGGCTGCGGCAGCGGACCCCACAGCTACAGCCACGGCGGCTGAGGCGGCCACGCGACCCTGCTTATTCTTGGGTTCCTCTTTCTTGTCCACAGGAATGTTAATGAAGTCAGGAGCAGCCACTGGCTGAACAAACTCCACAGGGAAAACCCCAGCTCGCCCATGAATGGCCCCAAA
>TU225289
TTGAGGAATACATAGCATATCAGTTCTTCCTCTGGTTGATAAATTCAGTATGTGATGTAAGATTAATGGCATTACATGGAGGGCAGGTAGAGCGAGTCCTTGGCACGATGTTGCAGAGCTGCCAGTTTTGACACTTGCTGAAACTGCTGCTCACTGGCCTTACCCTGTGGGACAACATTGAGCAGCCCTTTCAAGTAGTCCGGGGAACCTGATTGTAATGCATAGTCACTCCGAGCTCATTGTCAAACTTTAGTGGCTGCGTCCATATCACTCTTCGAAACCACAGACTGTAGTTGCTATCAATGCGTTCAGCCTCTGTAGCAACATCCAAGATGTACTCCCTTTTGTTTAGAGGGCGGACATTTTGACCTGGAGAAAGAGTGATAACACATGAGAAAAAGGCTTTTGATCCTTGTATTACTTCTTTCATCTTAGTTAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU225288 False 1590 lncRNA 0.47 10 4074670 4078448
TU225289 True 440 lncRNA 0.44 2 4077853 4078448

Neighbor

gene id symbol gene type direction distance location
CI01000046_04021483_04023514 GFER coding downstream 51156 4020458 ~ 4023514 (-)
CI01000046_04013708_04017841 SYNGR3, SYNGR3A coding downstream 56829 4011908 ~ 4017841 (-)
CI01000046_03967726_03970443 NA coding downstream 103957 3967457 ~ 3970713 (-)
CI01000046_03951775_03952660 BUD31, BUD31.L, BRAFLDRAFT_113775 coding downstream 121627 3951181 ~ 3953043 (-)
CI01000046_03946243_03948935 CPSF4 coding downstream 125126 3946230 ~ 3949544 (-)
CI01000046_04125918_04128585 CCDC97 coding upstream 47439 4125887 ~ 4128585 (-)
CI01000046_04136250_04185791 CACNA1H, CACNA1HA coding upstream 57407 4135855 ~ 4185848 (-)
CI01000046_04279865_04297801 EPN2 coding upstream 201417 4279865 ~ 4297801 (-)
CI01000046_04329752_04335164 PRPSAP2 coding upstream 250436 4328884 ~ 4335164 (-)
CI01000046_04336982_04343632 NA coding upstream 258257 4336705 ~ 4344054 (-)
G198483 NA non-coding downstream 3977 4070093 ~ 4070693 (-)
G198481 NA non-coding downstream 7451 4064673 ~ 4067219 (-)
G198477 NA non-coding downstream 15730 4058110 ~ 4058940 (-)
G198476 NA non-coding downstream 16856 4057464 ~ 4057814 (-)
G198469 NA non-coding downstream 17554 4049900 ~ 4057116 (-)
G198486 NA non-coding upstream 273 4078721 ~ 4079777 (-)
G198487 NA non-coding upstream 2297 4080745 ~ 4081328 (-)
G198505 NA non-coding upstream 20712 4099160 ~ 4099620 (-)
G198515 NA non-coding upstream 165093 4243541 ~ 4244246 (-)
G198520 NA non-coding upstream 170640 4249088 ~ 4250325 (-)
G198265 NA other downstream 274569 3665243 ~ 3800101 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other downstream 1206876 2866070 ~ 2867794 (-)
G196463 NA other downstream 1906026 2168266 ~ 2168644 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S other downstream 3294377 774434 ~ 780293 (-)
G195098 NA other downstream 3398542 670736 ~ 676128 (-)
G199054 NA other upstream 2018911 6097359 ~ 6097674 (-)
G199014 NA other upstream 2285730 6364178 ~ 6375406 (-)
G199130 NA other upstream 2499532 6577980 ~ 6594210 (-)
G199181 NA other upstream 2748237 6826685 ~ 6830453 (-)

Expression


Co-expression Network