G198483


Basic Information

Item Value
gene id G198483
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 4070093 ~ 4070693 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU225286
ATACTTTCTTGCAACGGCGCTATGTCCCATTGACCCAATCCAAAACAAATGACACTAGCCTCTTTCCTCAGGTAGATTTTCCAGGGTACATTGGTATAGGTGTAGTGCTCCTCACTGCTCCTCTTGTGCAGTTGAGTTTGAATATTCTCCTCTTCTACTGGAAGTTCTCTAGATACTGTAATGTGACACACCACAGTGACGTTACAGCCAGGCTAATATGGTCTCTATGTCGAAATAAAATGACATAGATGATCTGAGTTTACCAGGAGCAGGGGCTGGGAATCTCTGACTAACAGCTGGCACAGGAGGCGATCGCTTCGTCTTTATGCTTTTTGCTGGTTTTAGTGCCCCACCATCATAATCAAACTCCTTTGCAGATGATGAAGGAGAAACTGGAGTGTAGGTTTTCTTTTGCTGGTCCTGTGCTGGTGGAGCACTCATCTGGTCCTTGAGAATCAATATAGCTTCGTCATGGGGGTCTGGTTTCTTCAAAAACACTTTAGCTTCCCTCCTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU225286 True 514 lncRNA 0.45 2 4070093 4070693

Neighbor

gene id symbol gene type direction distance location
CI01000046_04021483_04023514 GFER coding downstream 46579 4020458 ~ 4023514 (-)
CI01000046_04013708_04017841 SYNGR3, SYNGR3A coding downstream 52252 4011908 ~ 4017841 (-)
CI01000046_03967726_03970443 NA coding downstream 99380 3967457 ~ 3970713 (-)
CI01000046_03951775_03952660 BUD31, BUD31.L, BRAFLDRAFT_113775 coding downstream 117050 3951181 ~ 3953043 (-)
CI01000046_03946243_03948935 CPSF4 coding downstream 120549 3946230 ~ 3949544 (-)
CI01000046_04125918_04128585 CCDC97 coding upstream 55194 4125887 ~ 4128585 (-)
CI01000046_04136250_04185791 CACNA1H, CACNA1HA coding upstream 65162 4135855 ~ 4185848 (-)
CI01000046_04279865_04297801 EPN2 coding upstream 209172 4279865 ~ 4297801 (-)
CI01000046_04329752_04335164 PRPSAP2 coding upstream 258191 4328884 ~ 4335164 (-)
CI01000046_04336982_04343632 NA coding upstream 266012 4336705 ~ 4344054 (-)
G198481 NA non-coding downstream 2874 4064673 ~ 4067219 (-)
G198477 NA non-coding downstream 11153 4058110 ~ 4058940 (-)
G198476 NA non-coding downstream 12279 4057464 ~ 4057814 (-)
G198469 NA non-coding downstream 12977 4049900 ~ 4057116 (-)
G198460 NA non-coding downstream 20353 4031795 ~ 4049740 (-)
G198485 NA non-coding upstream 3977 4074670 ~ 4078448 (-)
G198486 NA non-coding upstream 8028 4078721 ~ 4079777 (-)
G198487 NA non-coding upstream 10052 4080745 ~ 4081328 (-)
G198505 NA non-coding upstream 28467 4099160 ~ 4099620 (-)
G198515 NA non-coding upstream 172848 4243541 ~ 4244246 (-)
G198265 NA other downstream 269992 3665243 ~ 3800101 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other downstream 1202299 2866070 ~ 2867794 (-)
G196463 NA other downstream 1901449 2168266 ~ 2168644 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S other downstream 3289800 774434 ~ 780293 (-)
G195098 NA other downstream 3393965 670736 ~ 676128 (-)
G199054 NA other upstream 2026666 6097359 ~ 6097674 (-)
G199014 NA other upstream 2293485 6364178 ~ 6375406 (-)
G199130 NA other upstream 2507287 6577980 ~ 6594210 (-)
G199181 NA other upstream 2755992 6826685 ~ 6830453 (-)

Expression


Co-expression Network