G197450


Basic Information

Item Value
gene id G197450
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 5219755 ~ 5219984 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU224153
GGCTTAATTATTATCTGGGATTATTACGGGGATTATCTGAAAACAGTTCTTTCTAATTTTCATTAAACACCTGCTATCTTAATGGGTTTAGGATGACGAGCATGTCTGTATACTCTAATCGCTCAACGTGACACATTACCATGCATACAATACAGATAACCTCAATCTTCACTGTGGCACAAGGCCAAAACGTACACCTTTTGGTATTCAAATCCCAAAGTCTGAACTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224153 True 230 lncRNA 0.38 1 5219755 5219984

Neighbor

gene id symbol gene type direction distance location
CI01000046_04861221_04879259 MPP3A, MPP3 coding upstream 339086 4861221 ~ 4880669 (+)
CI01000046_04841558_04852685 NA coding upstream 366579 4841558 ~ 4853176 (+)
CI01000046_04811748_04819011 ZNF281A coding upstream 400387 4811610 ~ 4819368 (+)
CI01000046_04806234_04808207 NA coding upstream 411420 4805355 ~ 4808335 (+)
CI01000046_04694468_04701075 NA coding upstream 518502 4693655 ~ 4701253 (+)
CI01000046_05279865_05281709 BAXA, BAX coding downstream 59881 5279865 ~ 5282127 (+)
CI01000046_05305482_05310465 NA coding downstream 85209 5305193 ~ 5310479 (+)
CI01000046_05315583_05316990 NA coding downstream 95201 5315185 ~ 5317089 (+)
CI01000046_05335886_05341205 GPATCH8 coding downstream 115902 5335886 ~ 5341888 (+)
CI01000046_05392316_05401559 ARF3A, ARF2B, ARF1L, ARF3, ARF2, ARF1, ARF3.S, ARF5, ARF2A, ARF5.L coding downstream 171999 5391983 ~ 5402075 (+)
G197448 NA non-coding upstream 2669 5216830 ~ 5217086 (+)
G197447 NA non-coding upstream 4907 5214594 ~ 5214848 (+)
G197446 NA non-coding upstream 7125 5212425 ~ 5212630 (+)
G197445 NA non-coding upstream 10277 5209057 ~ 5209478 (+)
G197444 NA non-coding upstream 11656 5207832 ~ 5208099 (+)
G197451 NA non-coding downstream 4459 5224443 ~ 5224719 (+)
G197452 NA non-coding downstream 7762 5227746 ~ 5227973 (+)
G197453 NA non-coding downstream 13499 5233483 ~ 5233701 (+)
G197454 NA non-coding downstream 21569 5241553 ~ 5241852 (+)
G197455 NA non-coding downstream 27061 5247045 ~ 5247253 (+)
G196869 NA other upstream 798068 4415530 ~ 4421687 (+)
G197121 NA other upstream 848325 4371011 ~ 4371430 (+)
G197055 NA other upstream 1069975 4149423 ~ 4149780 (+)
CI01000046_03943890_03945302 ATP5J2 other upstream 1274255 3943794 ~ 3945500 (+)
G196936 NA other upstream 2025484 3186995 ~ 3194271 (+)
G197352 NA other downstream 54398 5259318 ~ 5276453 (+)
G197528 NA other downstream 506137 5726121 ~ 5742684 (+)
CI01000046_06808895_06820945 GSPT1, ERF3B, GSPT1L other downstream 1599954 6808507 ~ 6821543 (+)

Expression


Co-expression Network