G197452


Basic Information

Item Value
gene id G197452
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 5227746 ~ 5227973 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU224155
ATCACCTTGTAAAAAAAAATGCCTCATCCAATCTAAACGGTAATGACAAGTCTAACTTGAGACGTGGTTGTGAGACATGACCTCATGACCAGACCCACACAGAACCCCATAAAATCTGGCTAATTTGATCATGCATTCAGCTATGAATGACAGTGTAGTACCCTGAGCTCAGCTTAACACATTTTATCATGGTTAAATCCATTCTGCAAATTTTCTTTCAAAATCAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224155 True 228 lncRNA 0.39 1 5227746 5227973

Neighbor

gene id symbol gene type direction distance location
CI01000046_04861221_04879259 MPP3A, MPP3 coding upstream 347077 4861221 ~ 4880669 (+)
CI01000046_04841558_04852685 NA coding upstream 374570 4841558 ~ 4853176 (+)
CI01000046_04811748_04819011 ZNF281A coding upstream 408378 4811610 ~ 4819368 (+)
CI01000046_04806234_04808207 NA coding upstream 419411 4805355 ~ 4808335 (+)
CI01000046_04694468_04701075 NA coding upstream 526493 4693655 ~ 4701253 (+)
CI01000046_05279865_05281709 BAXA, BAX coding downstream 51892 5279865 ~ 5282127 (+)
CI01000046_05305482_05310465 NA coding downstream 77220 5305193 ~ 5310479 (+)
CI01000046_05315583_05316990 NA coding downstream 87212 5315185 ~ 5317089 (+)
CI01000046_05335886_05341205 GPATCH8 coding downstream 107913 5335886 ~ 5341888 (+)
CI01000046_05392316_05401559 ARF3A, ARF2B, ARF1L, ARF3, ARF2, ARF1, ARF3.S, ARF5, ARF2A, ARF5.L coding downstream 164010 5391983 ~ 5402075 (+)
G197451 NA non-coding upstream 3027 5224443 ~ 5224719 (+)
G197450 NA non-coding upstream 7762 5219755 ~ 5219984 (+)
G197448 NA non-coding upstream 10660 5216830 ~ 5217086 (+)
G197447 NA non-coding upstream 12898 5214594 ~ 5214848 (+)
G197446 NA non-coding upstream 15116 5212425 ~ 5212630 (+)
G197453 NA non-coding downstream 5510 5233483 ~ 5233701 (+)
G197454 NA non-coding downstream 13580 5241553 ~ 5241852 (+)
G197455 NA non-coding downstream 19072 5247045 ~ 5247253 (+)
G197456 NA non-coding downstream 19326 5247299 ~ 5247764 (+)
G197457 NA non-coding downstream 20377 5248350 ~ 5248582 (+)
G196869 NA other upstream 806059 4415530 ~ 4421687 (+)
G197121 NA other upstream 856316 4371011 ~ 4371430 (+)
G197055 NA other upstream 1077966 4149423 ~ 4149780 (+)
CI01000046_03943890_03945302 ATP5J2 other upstream 1282246 3943794 ~ 3945500 (+)
G196936 NA other upstream 2033475 3186995 ~ 3194271 (+)
G197352 NA other downstream 46409 5259318 ~ 5276453 (+)
G197528 NA other downstream 498148 5726121 ~ 5742684 (+)
CI01000046_06808895_06820945 GSPT1, ERF3B, GSPT1L other downstream 1591965 6808507 ~ 6821543 (+)

Expression


Co-expression Network