CI01000049_07881589_07906998


Basic Information

Item Value
gene id CI01000049_07881589_07906998
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 7881589 ~ 7907901 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000049_07881589_07906998.mRNA
ATGGACAATGCCCATACAAAGACGGTTGAGGAGGTGCTGGGATACTTCGGTGTCAATGAAACAACAGGACTGAGCTCTGAGCAATTAAGGAAAAGCAGGGAAAGATGGGGCACCAATGAGTTACCTGCAGAAGAAGGGAAGTCACTATGGGAACTTGTTCTGGAGCAGTTTGAAGATCTGCTTGTTCGGATTCTCCTTCTTGCGGCCTGTATTTCCTTTACTCTGGCCTGGTTTGAGGAAGGTGAAGGAACCATTACAGCCTTCGTAGAGCCATTTGTCATCCTCCTCATTCTTATTGCCAATGCCATTGTAGGAGTGTGGCAGGAGCGTAATGCAGAAAATGCCATCGAAGCCCTAAAACAGTATGAGCCGGAGATGGGGAAAGTGTACAGACAAGACAGGAAGAGTGTACAGAGGGTCAGAGCCAGGGACATTGTGCCTGGAGACATTGTGGAGGTGGCTGTTGGTGATAAAGTCCCAGCAGATATCCGACTTACCTCCATACGCTCTACTACTCTGAGAGTGGACCAGTCCATCCTGACAGGGGAGTCTGTATCCGTAATAAAACACACAGACCCAGTGCCTGACCCCCGTGCCGTCAACCAGGATAAGAAAAACATGCTCTTTTCTGGGACGAATATTGCGGCAGGACGAGCGATAGGTGTTGTAGTGGCAACAGGTGTACACACAGAGATCGGGAAGATCAGAGATGAGATGGCGGCCACCGATCCAGAGAGAACCCCTCTGCAGCAGAAACTAGACCAGTTTGGAGAGCAACTCTCTAAGGTGATCACATTGATCTGTGTGGCGGTGTGGGGCATTAACATCAGTCACTTCAGTGACCCAGTGCACGGAGGCAGCTGGCTGCGTGGAGCTGTGTACTACTTTAAAATCGCCGTCGCTCTGGCTGTAGCCGCCATCCCTGAGGGTCTTCCTGCCGTCATCACCACGTGCCTGGCGCTTGGCACACGCCGCATGGCCCGCAAAAATGCTATAGTCCGTTCCCTCCCATCTGTAGAGACCCTTGGCTGCACCTCCGTCATCTGCTCTGACAAAACAGGCACTCTTACCACCAACCAGATGTCTGTCTGCAGGATGTCTATTGTGGACATCGTGGCAGGTGAGAGGTGTTTACTGAACGAGTTTACAATAACTGGATCTACTTACGCCCCTGAAGGAGAAGTGTATAAGGACGGTGTACCGGTACGCTGCAGTCAGTATGAAGGGCTGGTGGAAATGGCCTCTATCTGTGCCCTATGTAACGACTCTTCGCTGGATTACAATGAGAGTAAAGGGGTTTATGAGAAAGTAGGAGAAGCGACTGAGACGGCACTCTGTTGTCTGGTGGAGAAGATGAACGTGTTTGACACAGACCTGAAGGGCCTCGCACCTACTGAAAGAGCCACTGCCTGCTGTTCAGTCATAAAGCAGCTAATGAGGAAAGAGATGACTCTGGAGTTTTCTCGAGACAGGAAGTCCATGTCTGTTTTCTGCTCTCCAAACAAACTCACTCGCTCTGCTTCAGGTGCCAAGATGTTTGTCAAGGGGGCACCAGAGAGTGTACTGGAGCGTTGCCGCTGGATACGGGTAGGAGGTGGTACACGGGTGCCAATGAGCTCTGACCTAAGAGAGCAGCTCTTAAGCACAGTAAGAGAGTGGGGCTCGGGACGTGATACACTACGCTGCCTCGCCATGGCAACCAGGGATTCACCCCCTGACCCTCGAACCCTGAATTTAGAGAACTCTGCAACCTTCTCAGAATATGAGTCGGACTTGACATTCGTGGGCTGTGTGGGAATGTTAGATCCACCCAGGAAGGAAGTGCTGAGTGCAGTGCGTATGTGCAGACAGGCTGGCATACGGGTCATTATGATCACAGGCGACAATAAGGGCACTGCCCTGTCAATCTGTCGTCGAGTGGGCATCATCACTGAGCAGGAGGAAGAAGAGGCTGAAGGTGGGCCGTATGGCAGCGGCCTCACAGGACGTGAGTTTGATGAGCTGCCTCCCCACCTGCAGCGGGAGGCCTGCCGCACCGCCCGCTGTTTCGCCCGCGTCGAACCAACTCACAAGAGCCGCATTGTGGAATATTTGCAAAGCCTAAACGATATTACAGCTATGACGGGTGATGGTGTGAATGATGCCCCTGCTTTGAAGAAGGCTGAGATTGGCATTGCTATGGGCTCAGGCACGGCTGTGGCTAAATCTGCTTCAGAGATGATCTTGGCAGATGATAACTTTTCAACCATTGTGGCCGCAGTGGAGGAGGGCCGAGCCATTTACAACAACATGAAACAGTTCATCCGTTACCTCATTTCTTCTAACATTGGAGAGGTAGTCTGTATTTTCCTCACAGCTGCTTTGGGAATGCCTGAGGCTCTGATCCCAGTCCAGTTGCTGTGGGTCAATCTGGTGACTGATGGCTTCCCAGCTACTGCTCTTGGCTTCAACCCACCTGACCTGGACATCATGTCCCGTCCCCCACGCTCCCCTAAAGAACCACTCATTTCTGGTTGGCTCTTCTGCAGATACCTTATCATTGGCTGTTATGTAGGGGCCGCAACAGTTGGAGCTGCTGCCTGGTGGTTCATGGCAGCTCATGATGGACCAAAGCTCAACTACTACCAACTGTCTCACTATCTGCAGTGCAGTGAAGGTCATGCTGAGTTTGCAGGAGTGCAGTGCTCAGTGTTCGAGTCTCCATACCCCATGACTATGGCCCTATCCGTGCTGGTCACTATAGAGATGTGCAATGCCCTCAACAGTTTGTCAGAAAATCAGTCTCTACTCAAGATGCCACCATGGTCAAACCCCTGGCTGGTGGGAGCCATCTGTCTCTCCATGGCCCTACATTTCCTCATCTTATATGTGGACCCTCTTCCTGTCATATTTCAGATCAGGCCGTTGTCTTGGCCTCAGTGGGTGACTGTTCTGAAGATGTCTCTGCCTGTTATTTTGATGGATGAAGCCCTGAAGTTCTTGGCCAGAAACTACATAGAGCCTGGCAATGAGTTGCTGCTGGACGAGGACGGAAATGCTACCAGGGGAGTGATTGGCAAACTGCAGCGGGCATTTAGGGGTGTGTCCTGGTCATTTGTGCTCATCTCTGCCCCATTGCTGGTCTGGATCTTCAGCCTGGACTCAGACATAACCAATATCTTCTGGGATTAGAAAGAAGGAGTATGTGTGAGAGTCTATGTGTGTGTGAGTATGTCTGAGTCAGAGAGGCAGACAGAAAAGTGGATGATATACAGAAGCAGTGTATGCATCTAATGTAGAACGAATTTTGTGCTCAACATGAAAAACAGTATGAATGAAAAGTTACGGAGCCACTAAAGGGATATGGTGAAGGAAAAAAATATGAGACGGGAGGAAAAATTATATGTCCGTGCTTTTGCTTTCTCTTGCAAAATATTTGCGTTCCCCTGAGAAACTTTGCGTTCGCTCACAAAGAACACAAAAGTTTTGCGAGTGAACACAAAGTTCCCCAGGGAATAGAGCTGTCAAAAGTACCGACTTCGGTACCTATCGGTACTGAAATTTTAAAAATGTGACGCTTTGAGCGCTGTTGAGCGGATTCGTAAACCTCTGATTGGCCATTGTGTTCACACGCTCATCAGATATGTCTATGATTGGCTACAATGATCAACGCATGGATTGAAAGCGTTTTGAAAGCACGTTTGGGAGCGTTAGAAAGCAGGCGTCTGTCAGCGGACTGGTCCGAAATAGACACCTGCTTTCAAACGCTCCCATGTGTGTCTGTGTAAGCGCTCGGTAAAGAGCGTCTATTGATGACATATCCGATGAGCCGTGAACACAATGGCCAATCAGAGGTGTTTACGTTTACATTTTTAAAATTTCAGTACCGACTAGGTACCGAAGTCAGTACTGACAACATTACCAGGGAACGCAAAACACTTGCCAATGGAAAGCAAAAGCATTTAAACATATTTTTGCCTCCCACCTCATAATTTTTCCATCACCATGTAAAGGAGCTCCGTAAAAGTTAGAGCAGGACCAGGACAATCACAGATAAATGAATGCTGGGAAAAGCTAGGGGCAGAGGGAGAAAAA

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K05853 ATP2A; P-type Ca2+ transporter type 2A

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000049_07881589_07906998.mRNA True 4074 mRNA 0.50 22 7881589 7907901

Neighbor

gene id symbol gene type direction distance location
CI01000049_07855958_07856965 NA coding upstream 23693 7855326 ~ 7857896 (+)
CI01000049_07799740_07805784 NA coding upstream 75805 7799740 ~ 7805784 (+)
CI01000049_07788293_07793674 NA coding upstream 87894 7788293 ~ 7793695 (+)
CI01000049_07735779_07751747 TCIRG1A coding upstream 129842 7735779 ~ 7751747 (+)
CI01000049_07707556_07709034 NA coding upstream 172288 7707556 ~ 7709301 (+)
CI01000049_07919606_07935459 SLC43A1B coding downstream 11705 7919606 ~ 7935585 (+)
CI01000049_07940922_07947928 TMX2B, TMX2 coding downstream 33021 7940922 ~ 7948246 (+)
CI01000049_07972199_07972908 NA coding downstream 64142 7972043 ~ 7973140 (+)
CI01000049_08032079_08038636 CRYBA1L1, CRYBA1L2 coding downstream 123593 8031494 ~ 8039109 (+)
CI01000049_08106860_08114028 SLC43A3A coding downstream 198389 8106290 ~ 8114745 (+)
G210164 NA non-coding upstream 31455 7849512 ~ 7850134 (+)
G210163 NA non-coding upstream 32092 7849201 ~ 7849497 (+)
G210162 NA non-coding upstream 32406 7848894 ~ 7849183 (+)
G210151 NA non-coding upstream 55054 7826278 ~ 7826535 (+)
G210142 NA non-coding upstream 67061 7814267 ~ 7814528 (+)
G210177 NA non-coding downstream 4229 7912130 ~ 7912345 (+)
G210202 NA non-coding downstream 76362 7984263 ~ 7985939 (+)
G210205 NA non-coding downstream 83019 7990920 ~ 7991279 (+)
G210211 NA non-coding downstream 103274 8011175 ~ 8011480 (+)
G210217 NA non-coding downstream 109400 8017301 ~ 8017535 (+)
G210091 NA other upstream 2733 7873750 ~ 7878856 (+)
CI01000049_07219171_07224229 NA other upstream 584527 7218811 ~ 7224268 (+)
G209660 NA other upstream 999559 6878133 ~ 6882030 (+)
CI01000049_04473766_04475768 GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 other upstream 3405319 4473662 ~ 4476270 (+)
G208074 NA other upstream 3999378 3877396 ~ 3882211 (+)
CI01000049_08326623_08329601 NA other downstream 420051 8326285 ~ 8329915 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00015640 LOC103356187,LOC107382365,LOC107664566,LOC107551445,LOC107556825,LOC101483122,LOC102289392 misc CM030132.1 CM030132.1 14502764 ~ 14515279 (-)