G209955


Basic Information

Item Value
gene id G209955
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 7534944 ~ 7536635 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU238185
TCATTGCCACCGATGGGTGTTGTCATGCACCACAGTTTATTCATTTAAATCACAAATATTATTTCTTTTACACAAATTGTACATTGATGTAAACACTCTATAGATTAAAATACATACTTCCAGTCATTACACTAGATCAATAATCATATCTTACGTCCTGAGCTTTTAAAAGAAATTTAACAAATAACTGCAGATGTGTTGCAAGGGACACAGTATGTAGATTTGAGCGGTAATTTTTATATGTAGAAACCCTCATCTAAAAACCTACAGTAACTGCTATAGCTATTCCAAGCCCTCTCCATACAAAAGGACTTCAGTGATTCACATTTGTGATCTGTTTTTCTCCATCTTAAAAAATGTGTCAACTTAAAAACAACAAATATAGACAACTGAATTTTAAGAAGAAAAATAAACTTTGTTTCAGGCAATTCACCCCTCTTACTCAGTAAGTCAAACACATTTTACATTTAAATGCACAAAAATCTTATATCAATAGTCTTATGCAACCTCTTCCACATTAGAGGGGATATACAAATTCAATTTACAATCCATTTTCGCTTCAAGTGCCAGCAAACACAGAGCAAAGCAATGCATTGCCCATGCAAAAGGAATGATTTTAAACTGAGGGGGTTGTGGGTTTATGAAAGACAGTGTCTTTCATTTCTAAGAGAGCAGGAGAGTATGGACCGGTAGAGAGGAGGGCATCGTATAAAACACCCGGATGTACTGATTTTAGCCAGATTGGACGATACATATCTCGGAGTACCTGAACTCCAGGTCTGCGGACTAAAAGATCTAATCTTGGATCGGCTGAATTCCGGTGTTTGCAAGATATTTGTAAGAACATTCACTATAATATGTTCTTCAGTCAGTTTGTTTATAGCTGGAAATTCTCTTAGAACATTGCGTTTCTAATGATGGAGACACATCGCCAGTTTTGTCTGTACTACCAATAAAACTTTGTGACCAGCCTTACAGTTTTGCCACGGTAGCATTCTCTGAAACCAGATTATGCATACAAAATATGGAGAAGACAAGCATCCATATAGACTTTTGAGATGTTAAGTGAAATGCTGTGACACCAGTCAAATATTCTGATGGTAGTACTACTATTATTTTTTTAAATGACAGATTACTGATGTTCTGGTGCATTATGGCCACATACTTCAGTGGATGTGCAGTCTTGCTTGGATTGGTCCCACTGTCTCTAATAACAATGAACTCTTTGGATCAATGTCCTCTGGTATATCACAGACACTATCATAGCAGCCGATCCCATTCCATACATCCCACTCCATACATTTTTGCCATGCATCCTGTGACGTGTCTTGGTGAATGCTCTGCAAACAGCACAGTAGTTGGTAATACGGACTACCAGGTGAAGCCACCATCTCAAAGACAGACTGGAAGGCCCTACGGTCTAACTCCTCATCGATCTGGTGTCGGTAGAAATCCATAGCAACCAGACAAAAGAGGCTAATGTCCACTGTGTCAGACTTCCCCATGCGACTGATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU238185 True 1516 lncRNA 0.38 3 7534944 7536635

Neighbor

gene id symbol gene type direction distance location
CI01000049_07441504_07445621 LRPAP1 coding upstream 89323 7441357 ~ 7445621 (+)
CI01000049_07321372_07321961 NA coding upstream 212000 7321313 ~ 7322944 (+)
CI01000049_07248575_07260524 CPZ coding upstream 274116 7248245 ~ 7260828 (+)
CI01000049_07244496_07246639 GPR78A coding upstream 288026 7243951 ~ 7246918 (+)
CI01000049_07219171_07224229 NA coding upstream 310676 7218811 ~ 7224268 (+)
CI01000049_07625650_07632416 NA coding downstream 89015 7625650 ~ 7632443 (+)
CI01000049_07635510_07639493 PAI2B, PAIP2B coding downstream 98875 7635510 ~ 7640259 (+)
CI01000049_07643462_07649170 NA coding downstream 105159 7641794 ~ 7649307 (+)
CI01000049_07651597_07659164 NA coding downstream 114962 7651597 ~ 7659164 (+)
CI01000049_07690452_07701127 NA coding downstream 153756 7690391 ~ 7701751 (+)
G209957 NA non-coding upstream 4684 7528220 ~ 7530260 (+)
G210008 NA non-coding upstream 9402 7525306 ~ 7525542 (+)
G210007 NA non-coding upstream 10347 7524392 ~ 7524597 (+)
G210006 NA non-coding upstream 10877 7523807 ~ 7524067 (+)
G210005 NA non-coding upstream 16729 7517473 ~ 7518215 (+)
G210010 NA non-coding downstream 8039 7544674 ~ 7546315 (+)
G210019 NA non-coding downstream 22289 7558924 ~ 7560052 (+)
G210057 NA non-coding downstream 31025 7567660 ~ 7570364 (+)
G210061 NA non-coding downstream 39147 7575782 ~ 7577512 (+)
G210065 NA non-coding downstream 55388 7592023 ~ 7592801 (+)
G209660 NA other upstream 652914 6878133 ~ 6882030 (+)
CI01000049_04473766_04475768 GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 other upstream 3058674 4473662 ~ 4476270 (+)
G208074 NA other upstream 3652733 3877396 ~ 3882211 (+)
G207888 NA other upstream 3910633 3624002 ~ 3624311 (+)
G210091 NA other downstream 337115 7873750 ~ 7878856 (+)
CI01000049_08326623_08329601 NA other downstream 791317 8326285 ~ 8329915 (+)

Expression


Co-expression Network