CI01000049_07643462_07649170


Basic Information

Item Value
gene id CI01000049_07643462_07649170
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 7641794 ~ 7649307 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000049_07643462_07649170.mRNA
ATATAAAAGCAGATACATAGGATGGTAAAAAAAAAAAAAAGTGCCCTCAGTGATATGGCAAAATTTGTCACCAAATGAAAATCTTGTCAGATATTATTAATAATAAATTAAAAATGACCAATTTAGCAAATAGTGCACAATTTTCAGTTTATTTAATAACTTTTAAATTGCAAGGCCTCTTAAATATCAAAAGCTACTCTTTATACTTTGGAGCTACAATGTAAGGCATATTTCACAAATGAACCTCTTTGGGTCAATCAGTGCAGGCTCACAAAAAAGCTATTCCCTCCTGAATAAAGAAAGCAATTTTTTGCAGCATACTGCTGCCTTCTGCCAAACCTAACATCCTTTACACTCATTGTACTCAATTCAGCTTTTGAATACATTTTTAAATATAGATATTTTATATTTTTGATATTTAAAGAAGGGTATATTGTGTTGTGATTGAATGTGTATTGTAAAGCAGTTTGTTTCAACTCATGATGTTTTATAACGTGCTCTATAAATGAAGGTTTAGTTGAGATTGTACCCTTAAAATTGCTTATGTGCACATTCTCTTTATATTCCACATTTATGGGCATATGATTCCAAATAATGGTTTAAATCTTAAGCATATTTTAAGTGTATCTTAATGTGTTTATTTATGCTTGATGTCCACCTGCTTATGGTGGAGTATAAAGTGAAGGTGCCCTGTGTTCAAGGGTTCAAAAAAAAAAGAGAAATTGTTCTAAATAGTACCAAATTGGGGTTCTTCGATTTGTAACACCCTTTTTGCTTAATAGAACCCTTGTTACAAGGTTCCATAAAGAACCATGCTTTGAAAGTGCTATAGGACCTTATTAATGGTGTTATAAATAACCTTTTTAATAAGTTTATTTTTATCACTTATTGAGTGTATTTGTATCTTCATATTAGTATTATTAATATTACTTTTTATATATCATTTATTAATTTTGTTTTTTGTATCTGCCTGGTCTTATATGATTATAGACATTTTAAGAAAGAGATCATTTACCTGTTGAGAGTGTGCTGAGAGTATGTAATTGAATGGCTGACCTCCAGAAAATCAGTAATGAGGTGACTTTGACAGTTAAAGATTTGAAAAACAAAAAGGCGGGAATAAAGAACCCTAAACTCTAACACAAAGAACCATAAAGGGTTCTTCAGGACGATACGGTTCTAAATAGAACTGTTACTATATGTAAAGAACCTTTAAAGAGCCATCTTTTTTTCTTTTTTTTTAGTGTAGAAAAAACAACAAATAAAAAAAAAAAGCAATATTCACTCAATTTATGTCTGAATTATACATTTGAATAATAAATGTATAAAGCTTATAAAGCTTTTTAACATGCCATGGTTATCCAGCTTTTTGATGTTTATTCATACATTGATTAGACCCATAGGAGATGTAAATGTTGAGGAAATAAGAAAACCATTCAAATGTATAATTCAGATATATCAAGAGAATATTGCTGTAAATCAAACAGTGGTTGTCTTTTTTTTTTTTTTTTTTTCTTTAAGAGGAGGAGTCTTAAGTTTGCTCTTACTCTACCTCATGTTATAGGTTTGGTAATATGTCTTAACAGTTTAAAGAGTCAACACATTGTGCTGTGAAAGGATAAACCTTTTAAAGCAATTTTTGAGCTGTCGGAGATTAAGGAAACAGACATGGACACTCGCGGGAAACAAGGTGAAGTTTACCTACAACATCAGAAACATGGTGAGAAGTGGAAGCGATATTGGTTGGCCCTTCATCCGGCTAGTCGGCATGGCATTGCACGATTGGAATTATCAGAAGCTGTTCACGAACGGTCAACTGTGGTCAGACGACATCCGGAGAGGAAAGTTGTACGTCTGGCTGACTGTTTGAGCGTCGTCAAGCTGCCGCCTCATGCAGAGGCTTGTCCAGGGGAAAACATGTCTGCCTTCTGTGTGGAGACAGAGGAGAAGAGGCTAGTGTTTGCAGCAGACAGGGAAAGCTGTGGAGAATGGGTGGACATAATATGTAACATTGCCTTTCAGAAACACACTAAAAGTGCTCCACAGCCGGTACCACTTATGGAGGACAATCAGATCTACATGTCCAGAGAACAACTGTCCGAGTTCAGAGTAGTTGTGCTACAGAGTGAGTCTTCAGTTCGTTGTGGCCTCAAAGGACAGTACTGGCTGCAAGCTAGTGAGGACATGCTAGTACTGCAAGATCCGGAGACCAGGAAGACTGTCATGGAGTGGCCATACAAGCTGCTGCGCCGCTATGGGCGAGATAAGATGCTGTTTTCTATAGAAGCAGGTAGGCGCTGTGAATCCGGCCCTGGAAACTTTAACTTTGAGACCAGGCAGAGTGAAGAGATCCTCCGCCTTATTGAGTCAGCTATTCGTCAACAGAAGAGCCTCGCCGTTACTGGAGAAAAGCACTCGCCACATTCTCCACGTTCTCGCTCTCCTCGCTCACCCCTGCCCAAACGCCCTGGAAGTTTTACTTTGCTTGATACAGAGGGCAATAACAGCCCTCAGCCTTCAGACGCAAAACTGTCCTTGTACCCTACTCCAACAGATGCCCTTAGCCCTATCTTAAATCCTGTACATATAAAACCTGCAAGTCCTATTGGCTCAACTGAAGCTGTATATGCAAACACCGCAGGTTCCATAAAAAGCACACACTCAGATCCAAGTGGCAGTATAAGCTTGATTGAGCCTGTGTATTCAAACCCTGCAATTTTAATAGGCAGACATGAATCAGTGTATGCAGATCCAGCAGATCTCATCAAATCCCATCAGAGTGTAAAGAAAGATCCTCTCCCATCTCATCATGGTGATTATTCAGAACCAGTGTATTCTGATCCTGCTGATGTCATCCGCCCAAATCCTAACAATTGTGTCCATGCCAACCCTAGTGACATGATGGACTGTCAGCCTGCGAAGACAATTATGAACAACGACAAGCAGCAAGAACCAGTGTACTCTGAGGTGTATAACCATGTCACACTAAACTCAAGTATAAAACGTGACCAGATGATTGAGGAGCCCATTTATAGTGTACCTGAGGTTACACAGGCAACCCAAAGCAATAACTCTCAGCAAAACAAAATGCTTGATGAGAACCAACCCATCTACAGCAAAGTTAACAAACCACCCAAAACTCCTCAGCCTCTCGAAGAAAAGAAGCTAAGCCAAACACGAGAGGTTGTCTCTGAGGACCTTGGAATGATTTAATTAAATCTGTAATAGAATTTGTCTTCACAAACAAGTAGCTTTTCATTTTTAATATTTAAAATTTTATTCTCCCCCACCCCACTGATTTCATAATTTATTAATCCATTCTACTGGACATGGTGAAATAATGACTGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000049_07643462_07649170.mRNA True 3350 mRNA 0.38 5 7641794 7649307

Neighbor

gene id symbol gene type direction distance location
CI01000049_07635510_07639493 PAI2B, PAIP2B coding upstream 1676 7635510 ~ 7640259 (+)
CI01000049_07625650_07632416 NA coding upstream 9351 7625650 ~ 7632443 (+)
CI01000049_07441504_07445621 LRPAP1 coding upstream 196173 7441357 ~ 7445621 (+)
CI01000049_07321372_07321961 NA coding upstream 318850 7321313 ~ 7322944 (+)
CI01000049_07248575_07260524 CPZ coding upstream 380966 7248245 ~ 7260828 (+)
CI01000049_07651597_07659164 NA coding downstream 2290 7651597 ~ 7659164 (+)
CI01000049_07690452_07701127 NA coding downstream 41084 7690391 ~ 7701751 (+)
CI01000049_07705032_07706755 NA coding downstream 55662 7704969 ~ 7706871 (+)
CI01000049_07707556_07709034 NA coding downstream 58249 7707556 ~ 7709301 (+)
CI01000049_07735779_07751747 TCIRG1A coding downstream 86472 7735779 ~ 7751747 (+)
G210065 NA non-coding upstream 48993 7592023 ~ 7592801 (+)
G210061 NA non-coding upstream 64282 7575782 ~ 7577512 (+)
G210057 NA non-coding upstream 71430 7567660 ~ 7570364 (+)
G210019 NA non-coding upstream 81742 7558924 ~ 7560052 (+)
G210076 NA non-coding downstream 71059 7720366 ~ 7721230 (+)
G210077 NA non-coding downstream 72148 7721455 ~ 7722273 (+)
G210142 NA non-coding downstream 164960 7814267 ~ 7814528 (+)
G210151 NA non-coding downstream 176971 7826278 ~ 7826535 (+)
CI01000049_07219171_07224229 NA other upstream 344732 7218811 ~ 7224268 (+)
G209660 NA other upstream 759764 6878133 ~ 6882030 (+)
CI01000049_04473766_04475768 GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 other upstream 3165524 4473662 ~ 4476270 (+)
G208074 NA other upstream 3759583 3877396 ~ 3882211 (+)
G207888 NA other upstream 4017483 3624002 ~ 3624311 (+)
G210091 NA other downstream 224443 7873750 ~ 7878856 (+)
CI01000049_08326623_08329601 NA other downstream 678645 8326285 ~ 8329915 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location