CI01000049_07690452_07701127


Basic Information

Item Value
gene id CI01000049_07690452_07701127
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 7690391 ~ 7701751 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000049_07690452_07701127.mRNA
CTTTAAAGACGAGTCGCGTTTGTTTTCCCTTGTAACAAACCTAACTTACTTAAAACGAAGGATGGCTTTGACAGTGTCGACGGACCTGTCAGTGAACACTGGCCCAACTCAGGTAGAGGAAAAGTTGGAAGACAAACAAAAAGCTCTGCGGGAGAGCATCGAGAAGGGGGAGCCCAAAATATTCGGGGTCTCTCAGATAGTGTTAGGATTGCTGATCATCTCCTATTCTATACCTCTGCTCCATACTGAAGCCACAATGCTGCTTAACTTTGGAGTGCCATGGTGGAGTGGCCTTATGTTTGTCATTTCAGGCGCAGCTGCAATAGCAGTGGAAAAAATTGCTACCGTGAAGACAGTCTCTGTTTGCTTGGCAGTCTCTGCCGTGACCATGATCATCTCAGTTATTGCACTTATCCTATACTATGTTGACATTATTTCCAATCCGGCAACCAGATGCCAACTGGGACCAGACCAGTTGTGCGATCACCAGCATTATGCCACTAAATTCAGCACAGGAGTGAAGATAACCATCTCAATGGTCAATATTGTCCAGACAGCACTGTCCTCTACTTTCACAGTTATACTGTATAATCAGAGGAGGAACTTTACAGGCTATGGGAGACCAGCTAAGGGGGATGTCAACTTTGCGCCCATCGTCGTTAATGGAACGGTGGTCCGAGACAAAGAGTTCCTGCGTGGACTGGGCAAAGTGCTGAAACTTCAGTGGCTACTTGGCAAAAGCGTAGAGGCATGAACAGACTCATTTGCATACAGTGTGATACACATTTATTACTTCGTAGTTTGGACATTTTATAAGGAAACTTAACATTGATTATACAGCTCTGGGGCCGTATTAACAAAGAATTTGATTTTACAACTAAGAGTCCTCTTGAAAGTTCTGAGCTAGGAGTTTTAGCTTAAAACCTATTCACAAAACTCTTAAAGGGATAGTTCACCCAAAAAGGAAAATTCTGTCATCATTTACTCACCCTCAAGTTGTTCCAAACCTATAAAAAATTTCTTTGTTCTGTTGAACACAAAGGAAAATATTTTGAAGAAAGTTTGTAACCAGGCCGCTTTGGGGCACCATTGACTTCCCTAGTAGGAAAAAAAATACTATGGAAGTCAATGGTGCCCCAGAACTTTCAGTTTCCCACATTCTTTAAAACATAACAAAAAAATGTATACAAGTTTGGAACAACCTGAGGGTGAGTAAATGATGACAGAATTTTCATTTTTGGGTGAACTATCCCTTAGCAGTGTTACCAAGGAACACCTAGTGTGAGGCGGTTGACCTTGTTGCTATTTATGATGTCAATTTTTTGACCGCGCTCATTTACATTGCACACAGCAAGCAGGCAGACAGCGAGAAGGAGAA
>TU238282
AGGATTCCTTCGTTGCTAACGGTTGCAAACAAAACAGACGGCGGTCCTCACTTAAACAGAAGCGATTTTTTTGTCTGAATCTATATTACGCATCAGTTTCTACTAGATTTCAGGTTTGTTTCTAGTCACAAAACGAAGGCCAAGTTAAAACGTTACATAGTCCTCATTACTTAGTATGTTGATGTGCTGTTAGGTGGTAACGTTAACTGGTAACGTTAGCTAATAGCCTATCTAAGAATAACCTTACTACCACCATATGATTTTTAGCCCATTGAAACTAATACTAGTGAGTGTAATTATTCGAGTAGTTAATGCAAGAATGCTCTTTGGAGCCCAATTCACCTCCCTTTCCGTCCCTCTCGTAGTTTACGTGATGCAGAGACCAGCTAAGGGGGATGTCAACTTTGCGCCCATCGTCGTTAATGGAACGGTGGTCCGAGACAAAGAGTTCCTGCGTGGACTGGGCAAAGTGCTGAAACTTCAGTGGCTACTTGGCAAAAGCGTAGAGGCATGAACAGACTCATTTGCATACAGTGTGATACACATTTATTACTTCGTAGTTTGGACATTTTATAAGGAAACTTAACATTGATTATACAGCTCTGGGGCCGTATTAACAAAGAATTTGATTTTACAACTAAGAGTCCTCTTGAAAGTTCTGAGCTAGGAGTTTTAGCTTAAAACCTATTCACAAAACTCTTAAAGGGATAGTTCACCCAAAAAGGAAAATTCTGTCATCATTTACTCACCCTCAAGTTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000049_07690452_07701127.mRNA False 1378 mRNA 0.42 6 7690391 7701751
TU238282 True 760 lncRNA 0.40 1 7700614 7701373

Neighbor

gene id symbol gene type direction distance location
CI01000049_07651597_07659164 NA coding upstream 31227 7651597 ~ 7659164 (+)
CI01000049_07643462_07649170 NA coding upstream 41084 7641794 ~ 7649307 (+)
CI01000049_07635510_07639493 PAI2B, PAIP2B coding upstream 50273 7635510 ~ 7640259 (+)
CI01000049_07625650_07632416 NA coding upstream 57948 7625650 ~ 7632443 (+)
CI01000049_07441504_07445621 LRPAP1 coding upstream 244770 7441357 ~ 7445621 (+)
CI01000049_07705032_07706755 NA coding downstream 3218 7704969 ~ 7706871 (+)
CI01000049_07707556_07709034 NA coding downstream 5805 7707556 ~ 7709301 (+)
CI01000049_07735779_07751747 TCIRG1A coding downstream 34028 7735779 ~ 7751747 (+)
CI01000049_07788293_07793674 NA coding downstream 86542 7788293 ~ 7793695 (+)
CI01000049_07799740_07805784 NA coding downstream 97989 7799740 ~ 7805784 (+)
G210065 NA non-coding upstream 97590 7592023 ~ 7592801 (+)
G210061 NA non-coding upstream 112879 7575782 ~ 7577512 (+)
G210057 NA non-coding upstream 120027 7567660 ~ 7570364 (+)
G210019 NA non-coding upstream 130339 7558924 ~ 7560052 (+)
G210076 NA non-coding downstream 18615 7720366 ~ 7721230 (+)
G210077 NA non-coding downstream 19704 7721455 ~ 7722273 (+)
G210142 NA non-coding downstream 112516 7814267 ~ 7814528 (+)
G210151 NA non-coding downstream 124527 7826278 ~ 7826535 (+)
G210162 NA non-coding downstream 147143 7848894 ~ 7849183 (+)
CI01000049_07219171_07224229 NA other upstream 393329 7218811 ~ 7224268 (+)
G209660 NA other upstream 808361 6878133 ~ 6882030 (+)
CI01000049_04473766_04475768 GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 other upstream 3214121 4473662 ~ 4476270 (+)
G208074 NA other upstream 3808180 3877396 ~ 3882211 (+)
G207888 NA other upstream 4066080 3624002 ~ 3624311 (+)
G210091 NA other downstream 171999 7873750 ~ 7878856 (+)
CI01000049_08326623_08329601 NA other downstream 626201 8326285 ~ 8329915 (+)

Expression


Co-expression Network