CI01000049_07635510_07639493 (PAI2B, PAIP2B)


Basic Information

Item Value
gene id CI01000049_07635510_07639493
gene name PAI2B, PAIP2B
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 7635510 ~ 7640259 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000049_07635510_07639493.mRNA
AACCTGCAGATATTAACAGTCCAGAGGTAGCAAAGACACCAGGAGGAGGCAACGGGCAAGGGAAGGATGAGAATGTTGTAAATGGACACAAGGAGGGGGACGCCAACCCCTTTGCAGAGTACATGTGGATGGAGAACGAGGAGGAGTACAATAGACAGGTGGAGGAGGAACTCTTGGAGCAGGAGTTTCTTGAGCGCTGTTTTCAGGAGATGTTGGAGGAGGAAGATCAGGATTGGTTCATTCCTGCCAGAGACCTTCCCCCTGGAGTAGGGCAGATCCAACAGCAGCTTAGCGGGTTGTCGGTCAGTGACGGAAACGCCGAAGACATTGCACGCAAGAGCAGCTTGAACCCAGAGGCCAAGGAGTTCGTTCCAGGAGTGAAATACTAGAGACCCTCCAGTTAGGGGCTCCTTTATAGAGACTTTATGTGACCGCTGGTGGCCAGGGGTCACCCTCACACATACTTCAATCTTCCTGGGGTTGTGTGGGGCTTGATGGGGTGGGGCTTGTGGGTTGGGGAGGGGGGGTGCTGCTGGATGCTCTTCTATAAGCTTTTTATTTCCGTCTGTCTCCATGTATAATGTGGGCGGGTTACTCAGTGTAATGTTCCTATTGGACAGCTGCAGATTGCGACTAGTTCTCCTGGAAGATCTTTGTATTAATCTCAGAGGAACAGTTATGTGAGTTCCACTATTGTGATAGTGACTAGCAGTTTGTCCCTGTGTCATTGCCATTTTCTTTTTTTCCTGTCTTCTCTTTTATTTTCTTTAAAAGGAAGTTTGGCGGGGAGGTGTGTGTCATAAGAGTGGGAGGGGAAGGGCTGGGACAAAGGAAACCTGACAGTAAAAGGACCGTTGACAGGTGGACCATTCTTTGATGGACTGATGAACTGGTGGCAGCTGACAACTTTTGAGGGATTTTCACAGAAACATTTTTCCTGTTTCTTTTCTCCTTCCTCCGTTGAAGTTCTGTCACAGTGTGCAACGTGCATTAACAAAAATGGAAAAAAATCAA

Function

symbol description
paip2b Predicted to enable translation repressor activity. Predicted to be involved in negative regulation of translation. Predicted to act upstream of or within negative regulation of translational initiation. Predicted to be active in cytoplasm. Orthologous to human PAIP2B (poly(A) binding protein interacting protein 2B).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000049_07635510_07639493.mRNA False 1014 mRNA 0.48 3 7635510 7640118

Neighbor

gene id symbol gene type direction distance location
CI01000049_07625650_07632416 NA coding upstream 3067 7625650 ~ 7632443 (+)
CI01000049_07441504_07445621 LRPAP1 coding upstream 189889 7441357 ~ 7445621 (+)
CI01000049_07321372_07321961 NA coding upstream 312566 7321313 ~ 7322944 (+)
CI01000049_07248575_07260524 CPZ coding upstream 374682 7248245 ~ 7260828 (+)
CI01000049_07244496_07246639 GPR78A coding upstream 388592 7243951 ~ 7246918 (+)
CI01000049_07643462_07649170 NA coding downstream 1676 7641794 ~ 7649307 (+)
CI01000049_07651597_07659164 NA coding downstream 11479 7651597 ~ 7659164 (+)
CI01000049_07690452_07701127 NA coding downstream 50273 7690391 ~ 7701751 (+)
CI01000049_07705032_07706755 NA coding downstream 64851 7704969 ~ 7706871 (+)
CI01000049_07707556_07709034 NA coding downstream 67438 7707556 ~ 7709301 (+)
G210065 NA non-coding upstream 42709 7592023 ~ 7592801 (+)
G210061 NA non-coding upstream 57998 7575782 ~ 7577512 (+)
G210057 NA non-coding upstream 65146 7567660 ~ 7570364 (+)
G210019 NA non-coding upstream 75458 7558924 ~ 7560052 (+)
G210010 NA non-coding upstream 89195 7544674 ~ 7546315 (+)
G210076 NA non-coding downstream 80248 7720366 ~ 7721230 (+)
G210077 NA non-coding downstream 81337 7721455 ~ 7722273 (+)
G210142 NA non-coding downstream 174149 7814267 ~ 7814528 (+)
G210151 NA non-coding downstream 186160 7826278 ~ 7826535 (+)
CI01000049_07219171_07224229 NA other upstream 338448 7218811 ~ 7224268 (+)
G209660 NA other upstream 753480 6878133 ~ 6882030 (+)
CI01000049_04473766_04475768 GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 other upstream 3159240 4473662 ~ 4476270 (+)
G208074 NA other upstream 3753299 3877396 ~ 3882211 (+)
G207888 NA other upstream 4011199 3624002 ~ 3624311 (+)
G210091 NA other downstream 233632 7873750 ~ 7878856 (+)
CI01000049_08326623_08329601 NA other downstream 687834 8326285 ~ 8329915 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location