CI01000050_07037053_07037750 (HER3)


Basic Information

Item Value
gene id CI01000050_07037053_07037750
gene name HER3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 7036592 ~ 7037814 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_07037053_07037750.mRNA
ATTCCAACACAAGGAAGTCTGATAATTCATCTGGGTATCTAAGTACTTTGAGCATTTGATGACAATGGCTGCAGCATCAGATTGTGCGGTAACGGCAAAAACTAAATGCGTTAAAAAGGTTTCTAAACCACTGATGGAGAAGAAAAGAAGGGCACGTATCAATAAATGTTTGAATCAACTGAAAAGCCTCCTGGAAAGCGTCTGTTCCAACAATGAATGGCCAAAGTTTGGGACTCTGCTGAATATCACGCTGGCTACAGAAGTTGTCTCGCCTCTGTCAGTCATTATCTTCTTGCGTCAGACACAGACAGGGATTCCCGTTTCACTATGCTGACACATCTTAAGAGCGGTCCTCACCACGCCAGAGTTCATGATTTCAGTACTGCGGAAAGCGACCCCGCACCGATCCTTGCACCAACAAGTACACCTCGGCGATCACATAGGCCTAAGGTTTCGCTTAAAACAGAAGCTTCTTATCCCAACGTGCAGCAAACATCAGACAGAAATTATTGCTTTATGCCGAAGAGGACTGAGATTTGTGATATGGACAAACAATCATTCGACGCACAGGTTGGGACGTCTGGATTCAAGAAGCTCAAAACCATGCACTTCAGTTTAAAAAATACAAAGATTGATGAGTGCTGCATTTTGAAACATAATTATTGGCGGCCTTGGTAAATATGAACAATTTCAAATTTCATTGTTTTAACACTTAGACTTTAGCTCTAATTTTTGCTTCTCATGCACTGTATATGTAGATCTTATTTTTTTATGAATGTCTATTTTAGTAATAAA

Function

symbol description
her3 Enables DNA binding activity. Acts upstream of or within negative regulation of neurogenesis and negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including DEL; central nervous system; epiblast; midbrain neural keel; and neural plate. Orthologous to human HES3 (hes family bHLH transcription factor 3).

NR:

description
Her3 protein, partial

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_07037053_07037750.mRNA True 795 mRNA 0.41 3 7036592 7037814

Neighbor

gene id symbol gene type direction distance location
CI01000050_07030874_07033872 NA coding downstream 2720 7030635 ~ 7033872 (-)
CI01000050_06949824_06962679 NA coding downstream 72946 6949347 ~ 6963646 (-)
CI01000050_06752838_06802179 ESPN coding downstream 234109 6752781 ~ 6802483 (-)
CI01000050_06735445_06742619 ESPN coding downstream 293330 6735389 ~ 6743262 (-)
CI01000050_06729717_06733879 NA coding downstream 302172 6727996 ~ 6734420 (-)
CI01000050_07047887_07057166 TAS1R2.2 coding upstream 9738 7047552 ~ 7057414 (-)
CI01000050_07155856_07157697 NA coding upstream 117257 7154965 ~ 7157697 (-)
CI01000050_07207399_07217984 OGG1 coding upstream 169361 7207175 ~ 7217984 (-)
CI01000050_07239689_07244721 NA coding upstream 201801 7239615 ~ 7244721 (-)
CI01000050_07307744_07309403 NA coding upstream 269597 7307411 ~ 7310537 (-)
G216688 NA non-coding downstream 105277 6930980 ~ 6931315 (-)
G216686 NA non-coding downstream 107769 6928558 ~ 6928823 (-)
G216684 NA non-coding downstream 109515 6926776 ~ 6927077 (-)
G216624 NA non-coding downstream 115582 6920457 ~ 6921010 (-)
G216783 NA non-coding upstream 30584 7068398 ~ 7068730 (-)
G216785 NA non-coding upstream 38152 7075966 ~ 7076189 (-)
G216787 NA non-coding upstream 39521 7077335 ~ 7077568 (-)
G216788 NA non-coding upstream 40272 7078086 ~ 7078321 (-)
G216790 NA non-coding upstream 42659 7080473 ~ 7080716 (-)
G216408 NA other downstream 680081 6356017 ~ 6356511 (-)
G216093 NA other downstream 1484489 5489557 ~ 5552103 (-)
G215935 NA other downstream 1963483 5048916 ~ 5073109 (-)
CI01000050_04564233_04580815 KANSL3 other downstream 2423700 4563687 ~ 4581278 (-)
G214436 NA other downstream 3447535 3525816 ~ 3589057 (-)
G216931 NA other upstream 126281 7164095 ~ 7165401 (-)

Expression


Co-expression Network