CI01000051_01628114_01629925


Basic Information

Item Value
gene id CI01000051_01628114_01629925
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 1627716 ~ 1629952 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_01628114_01629925.mRNA
ATATATAAATGATACAGGGTGTTGAATCAACACAAAATTGGTGTCAAAAGTGAAACATTACACTGCGTAGTGTAATAATAAAAAAATAATAAATGTAACTGCGACTTTTTACCTCACAATTCTGACTTTTTCTTGCAATTGCGAGTTTATAGCTCACAATTCAGACTTTCCCCCCCCTCAGAATTGCAAGTTATGAACTCGGAACAGAGATAAATAAAGTCAGAATTGCGATATATAAATTGCGATATGTAAACTTCTGTGGCGGAAACTAACTTTAGTAGTTGACACATAAACGTACCTGAACACATTTTATATAATGGTTGTTAATTTGACACAGTTTTAGACAGGTAGGTAGGTAGATAGACACTACACACATATAGACATAACGAAAAGTTACAATGGCCCGGGGCATTGTGAAGGTGTGTCAGCAACAAAGGTTCCCATATTTTGCCAGAGATGCCTCAATCAATCTTTTCGATTCAGGACTCATTGTCCACACTGCAGAAGCAGCGCTTATGCAAATAATCCATTTGTGGTACCTTCAAATAGAAGGAGACATCTGCGCCCAATCCTGCCAGGAAATTTTGATACATTTAATTCAAGAAGACCTGTTGGCTCAAGCATACGGAACCCGTTCCAATGCCACGGATTCGAGTTCAGCCTGCAAATTTAATGACTGCCATGCAACCTGCAAACTTAAATGCTGCTCCGGCTGGTCCTATCCAAGTCGCCCAGACACCTCCCCCAGCTCTACTGCAGCCATACTCCACCCCACTGCTGCCAAACCCCGCCCCATCGCTGCTAAACCCCGCCCCGCCCCAGGAAGATTTGCAGGCTGTGCTTGATGAGTGGTAAGTCCCATCAAGAGGATA

Function

NR:

description
hypothetical protein cypCar_00029651, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_01628114_01629925.mRNA True 872 mRNA 0.43 4 1627716 1629952

Neighbor

gene id symbol gene type direction distance location
CI01000051_01502977_01503138 NA coding upstream 124453 1502843 ~ 1503263 (+)
CI01000051_01457945_01462388 TTR coding upstream 165114 1457899 ~ 1462602 (+)
CI01000051_01439230_01450774 NA coding upstream 176456 1438443 ~ 1451260 (+)
CI01000051_01419542_01436241 NA coding upstream 191385 1419049 ~ 1436331 (+)
CI01000051_01401065_01414909 NA coding upstream 211784 1399717 ~ 1415932 (+)
CI01000051_01630035_01632795 NA coding downstream 83 1630035 ~ 1633327 (+)
CI01000051_01636300_01644607 MEP1B coding downstream 6348 1636300 ~ 1644649 (+)
CI01000051_01669393_01716229 NA coding downstream 39374 1669326 ~ 1717268 (+)
CI01000051_01765268_01780393 NA coding downstream 135083 1765035 ~ 1782414 (+)
CI01000051_01945810_01948306 NA coding downstream 315858 1945810 ~ 1948486 (+)
G217946 NA non-coding upstream 58503 1550703 ~ 1569213 (+)
G217936 NA non-coding upstream 111807 1515657 ~ 1515909 (+)
G217934 NA non-coding upstream 136837 1490662 ~ 1490879 (+)
G217893 NA non-coding upstream 158925 1465253 ~ 1468791 (+)
CI01000051_01367599_01369326 NA non-coding upstream 248101 1367439 ~ 1369436 (+)
G217999 NA non-coding downstream 37479 1667431 ~ 1667723 (+)
G218000 NA non-coding downstream 46991 1676943 ~ 1677142 (+)
G218001 NA non-coding downstream 53982 1683934 ~ 1684520 (+)
G218037 NA non-coding downstream 161582 1791534 ~ 1791794 (+)
G218044 NA non-coding downstream 170925 1800877 ~ 1801108 (+)
CI01000051_00638200_00720543 CDC42BPB other upstream 903012 637590 ~ 720669 (+)
G217075 NA other upstream 1243588 324465 ~ 384128 (+)
CI01000051_02060996_02061735 NA other downstream 430035 2060534 ~ 2062355 (+)
G218981 NA other downstream 1615491 3245443 ~ 3246873 (+)
CI01000051_04374052_04393328 NA other downstream 2744458 4372658 ~ 4393677 (+)
G219803 NA other downstream 3285022 4914974 ~ 5052033 (+)
CI01000051_06825895_06830637 NA other downstream 5195847 6825895 ~ 6830637 (+)

Expression


Co-expression Network