G223416


Basic Information

Item Value
gene id G223416
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000052
NCBI id null
chromosome length 3494004
location 1023389 ~ 1026474 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU253426
GGTAGCTTTTGATATTTAGAAACAAATTCAATCAAATGTTGGAAGCATGATCTAAACAGGCAAAAATAAGCAAGCTTGGGGTTCAGGGTGTAAGAATCTTAATCGACTGTCACACTTGCAACCAATAATAAAAACAAAAAAATACACACTTTTTCAGCAGATGACTATGATGTAAAACATGGTTGATTTAGTGGCAGTGAGAGAGGTTTAACAAAACTGTCTACACTAACTCTGTAAACCTGCAGTCCAAGATGTATTTTCAGTTGTTTGCATCATGAGATCATAGGTGCATCAGTATAGTCCATTTATAAAATGCATATAGAAAAACTACAAAGAATTCATTTTTCTTGGCATCTTTCCTTGTTGCAGAGCTGTAAAAAGTTGATGTTTCAGTGATAAAAATTCTCTTTTTCCCAAAAACTCTTGAGGAGGTAAAACAGGTTTCAACAGAAAAGCTGAATACAGCCTTACAAAAGGTTGTTATAAAGATACAATATTTCATGTTGTTTAATTGCAGGATTCCTAGCTATCACACACTGTGATGTTAAATAAAAACACCGCATACACACGTGCACACACCCGGCCTTTCACGCTCGCACACAGGCAGACATACAGTCAGTCACGCGCACATTGTGTCAAGTCTCTGGCTTGGCAGTATGTCAAAGTATAATTTCAAGTGAGCAGAGGGAATTTTAAGGATGTAGTGTTTCTCTCTCTGTGTTGCCTTCATCCTCACATCACATCTGCACGTTTGTCCCTCACTTTGTTCCTCAATTTAGTCCGAGCTTTGAACGCAGCAGAGTTAAACAGATGCTGTGAAGAGACAAGCCAAGGTTACATGAATATGTGAGCAAAAACTTAAAATAAAGGGTGCTGCTTTCATTTGCATGAATTATCTTGGCAGACAGTTCACAAAATCAACTGAATCTGAGTTTACTCTGCAAACTAATACCTTTTATTATGTCAGTGTCACTTTGCGTGCTTTATTACATTAATAAATGAAAAGGTGAAAGATTTACCCTCTCTGTGCGGGAGATCCTGCTGGCTTTAACAGATGCATCCAGGATGAGAGGAGGTCCAAGTCCAAAAATATCCCTCAGCAAAGGATTAAACTGTAGGTGGTGTCTGACTCCAGACTCGAGCACCTCCTTAAAGGCATCATAAATCCTGCGGCGCATCCAGCCATCGATGTAGATGGCCTCAATCCCAAACTGGATCTTCTCCTCTGTGAAATCTTCATTCTCAATGTAGTGCAGCACTTCTCTGAAGATTGAGCGCTGTTTCCTGCGGTCGTTTTTAGCACGATGTTTGTTTCCGTCAGTCGCTAGACTCTTTAGACTGTCACACAATGCATCGCAGTCCTCATACTCGAACTCCTGATCGATGTCACGGCCCAGTTCATACAGCAGAGCGATAGTCTCTCCCACAGCAATCCTGAAGTTCACCTCGCTGCTTTCTAAACACGCATGCAGACGTGGCAAGTGGCTGAAATACAGACAAAGAGAAAGATCATATTACAGACAAATTGGACTATCTGTACTCTATCTGGGTGTTGTCACATGGCTTTTTATTCACCCTGATAAAAGAATTACATAAAAACCTTGGAGACATTATTATAACGTGTTTAGTATTCACTTTGGCTTAGATTTTAGACCTGCTTTGGATTGTGGCTTTGTAACAACAAAACACTATCCCATCTCACTATACTGTTATCCTTTCAGTGACAGAGCAACAGAGGGAGCTCATGGACAGGAAACGAGTTAACCGGAGTATATGTAAAACGCTCGCTGGTGTCTGAAAGTGAGTTTTGATATGAAAAATGTTTTAAATGTTGAGGTTAGCTGGTAGCCTGATATGAAAACATGGGACATGAGCAGCGGTGTCCTCTTCTGATTCAGATAAACTTTTTCTTTGTTCATGACCACTCCCTTAAGCCCCAGTTGGCCCGCTTTGGACCAAAGTATTTGGCAGGCCAAAAACCCCTGGCCGTTGGCCCTGAGGAGGCCTGATCAAGCCCCAGAGTGACAGTGGAAACGCAACTGTCCCTGGCACACACTAGCATGCTCACTTCTGGCCCAACAGTGGAAACACGGCTAATGTGGTTCAGGATACATGCAGTTTTTAAAATCAAATATAAGTTAATACCATATGCCCCAACAAAACAAACCTATAAAATCTAAAAATAAATCTTGTATTCTTTTAATTATTTAAACAGGTTTCGTCACATATTTAATGAGGAGTTAATACTGCTTATCAGCAAAACAAGTTTAAAATACTCAAAATATGTTTTATTTAATAAATACATATGTATTGACATGGGTTGATTCATATGGGTTGGTATACATGTACTGAAAATAAATGAACTAATATATGAATACATATAAATTAGAGGTCAATTGATATTGGATTTTGCTGACAGAATAATTTTGTCTTTAAATAAAGGTAATAAACAGACAAAATGTATATATTCTGTGTGTTAAATAATGTTCTTAGACTTTCCTGCATGTGATGGTGTGGCACAGAGAGAAGCCACAAGAGATGAATTAAAAACCAAATACAGTTTATTGTGAAAACAGAATACCAATAATAACCAGAAAAAAAATAAGATTTTAAAGGGTTAGTTCACCCAAAAAGTAAAATAATATCATTTATTACTCACCCTCATGTCATTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU253426 True 2672 lncRNA 0.38 4 1023389 1026474

Neighbor

gene id symbol gene type direction distance location
CI01000052_00906265_00916799 SEMA3B coding upstream 106576 904556 ~ 916813 (+)
CI01000052_00836931_00841228 TMEM51A coding upstream 181956 835368 ~ 841433 (+)
CI01000052_00793472_00831585 KAZNA coding upstream 191436 793472 ~ 831953 (+)
CI01000052_00714377_00725358 ZYMND12 coding upstream 298000 714377 ~ 725389 (+)
CI01000052_00702155_00711896 SLC16A1, MCT1A, SLC16A1A, SLC16A1B coding upstream 311493 702155 ~ 711896 (+)
CI01000052_01044855_01046432 NA coding downstream 18381 1044855 ~ 1046617 (+)
CI01000052_01143235_01145343 NA coding downstream 116682 1143156 ~ 1147150 (+)
CI01000052_01295531_01298937 NA coding downstream 267720 1294194 ~ 1299203 (+)
CI01000052_01368837_01373810 OPN7C coding downstream 342363 1368837 ~ 1374198 (+)
CI01000052_01383491_01401660 NA coding downstream 355676 1382150 ~ 1402229 (+)
G223458 NA non-coding upstream 1323 1021766 ~ 1022066 (+)
G223482 NA non-coding upstream 2734 1020169 ~ 1020655 (+)
G223450 NA non-coding upstream 4338 1018631 ~ 1019051 (+)
G223480 NA non-coding upstream 22750 1000358 ~ 1000639 (+)
G223476 NA non-coding upstream 30375 992814 ~ 993014 (+)
G223451 NA non-coding downstream 10793 1037267 ~ 1042235 (+)
G223442 NA non-coding downstream 21059 1047533 ~ 1048109 (+)
G223461 NA non-coding downstream 22796 1049270 ~ 1050198 (+)
G223485 NA non-coding downstream 24775 1051249 ~ 1051614 (+)
G223429 NA non-coding downstream 25837 1052311 ~ 1053355 (+)
G223545 NA other downstream 244018 1270492 ~ 1270927 (+)
G223694 NA other downstream 1022852 2049326 ~ 2104299 (+)
G224953 NA other downstream 2404662 3431136 ~ 3460136 (+)

Expression


Co-expression Network