CI01000052_00836931_00841228 (TMEM51A)


Basic Information

Item Value
gene id CI01000052_00836931_00841228
gene name TMEM51A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000052
NCBI id null
chromosome length 3494004
location 835368 ~ 841433 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000052_00836931_00841228.mRNA
GTATATAAAGCAGCGTCTGGCTGTGTAAAGCTGCATTTATGTCTTTAATGTTTGCGTTAAAGATATTAAACTCTTATTTATTTAGAGTTTTTTTTAGTGTTTAGACGTTTTACTCCTTTTTATTATTAGTGTTATTCTCTTCTTCGTTCACAGACGTTCAAAATCTAGGCTAGCTACTCATAGCAGAGTTTCGGACATTGATTTTTTAAAGGGACATTTCACCCCTCCCCTTCCTCAATTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCAGTACATTTTTTTTTTTAAACTCCGATTACTTTTTTTAGTAGTACATAAAAAGATGCTTGGCATGAGTTTTAGGCACTGACACCCTTAGGGGCCATTCATCACACTGAACACGTTTTTGCTTAAAAATGCCGCAGGATCTAGAGACCTTTTTTATTTTTTATTTGAACCACTTTCAAACTTAAATTTGAACTTTAACGCTGTAATTTTTTTTTTTAGAACACTGTGTAGAACATTGTTTTTCTATGTAAAACATTAGCTAGACAGACGTCTTTGACCATTGCGCTTGTTTCACATCTTTTGCCTGAAATGTCATTATTAAAAACGCAACGCTCAAGTTTTCAACTTGTATACAAAGTGTAGAGTTCCTTTTAAGATACAGCTACCATCTGAAATACTATGTCTAAATAGGGGTGTCCTTTGAGTTTCTGGGCTCCTGGTACAGTTTGTTGCCCAAGCTCCCTCAGCTGAGACCTTCCTCCCTATTACGGTGCCCCTGTTTAATGTGAATTTATGTGGCACTATTTGTTTTGCTAATCTTGCTAAAATTGCTTTTGTTAGAGGAGGAAATTCTTGCCATTCCCCAGCGCAGATTCACTATCATAATTTTATCTGTCTGCATGCTTAGACGTGCTCTGTAAACGGTCATGTGCGCCTTCTAAACTTTTCTAAACAATGTGCCAGGATGAAATTATGTCTGTCCATGGAGACTTTAATAACCCTGCAGGAATACAAACGTAGAGCTCCTGAGAAACTGCCACAACTGCCACAACCCACATTTTTCCATATTCACAGCAAAATGTATGAGTCACTGCTGAGGGAAATAGATTCCATCTTAAACCACCTGGCAGTTCATGTACGAGATTTACACTGATCTGATCTGAGAGCATGACTTAAAGGTGCTTCCATGCTGAGAAATGATTAAGGGTGCGGTAAGAAAGCTTATTCCAGACCTGCCTGTACAGATAACCAATACCAGAAGCTGTGTAGGCATGACAGCAGAGTTATGATGTGCTTTTTTTAGTGTGTCTGTGATTATTAAACAATAACACATTGTCAGTAAAGACATTTTTGGATTTTTTTTTTTTTTTTTTTTTTTTTTTAAACTGGCTGCCTGGTTTTCCGTCCAACATAAACCTTCCAGAGCAGAGATTAAATTTCACCAAAGTCTGTTCATGAACTCTCTCACTTCTCTCTTGAATCAAACTCTTTCTTCCATTTTCATGCACCTGTAACTGTAGCTTAGCCAGAGGGACACCTACTTAATCTCATGGAAGGAGGTTAAACAAGCCTAACATGTCTACCGATGTGTGTGCAGACAATAAATATGCTTTGATAAAAACTTTATCACTGCTGAAGCACAGGCTGGGTGACTGCTACGCTATTTTCACACAGGCTTTATGGAGGAACTGGGTCTGGATCTTTGACGTTTATTGCTTTTATGATAAGCGGATCAGTGCTCCTGAAAACAATGGAAAAAATGAGATAGGTCAAGCTTTAAGACATTTTGATAGGCAAAGGACAAAAAAACAACGTGTCCAGAGGAGATTCAAGTCCATGGTAAGGTTTGGAAGTATGTCCTACAGCGACCAGACTCCACCCAGCCCCAGCAGGACCAGCAACAGTAACTCTGGGGCGCAGTATGCTACTGCCGCGCTGGGCGTGGGCCTCATTGCTCTGGGGATTGTCATGATTGTGTGGAGCGTGGTGCCGGCGGGGTCCGGAGGGAACAGCTCCAATTCGGGAACGAACCCCAGTCAAGTTAGGGAGACCTCGTCCGTGGCTTTCGTCCTAGTGGGGGGAGGAGTGGCGCTGCTGCTGCTGTCTGTATGTCTGAGTGTACGGAACAAACGCCGAGCAGCCAGGGGACAGGAAGCCGGCAGTACACCCGCTAACACACAGGAGGAGGGGGCTACAATGGACCAACTAGCTCAGAACTACATGGTCCCCACTTATGAGGAGGTGGTTATGAGTGGCCAGTATCCCATCAGTCAGTCCTCTGAGCGCCACAACAGTGTCACACAGCTGCCAGCCTATGAGGAGCTAGAGGAAGGCCTGAACACCGTGGATGATGGATCCAGCCCATCACGCAGACCTTCATCCCAAATCGACCCCAGCACTGGAGCGGGTGGACGCAGAAATAGCCGTCCCGGTCGCAAGCTGATTCCCCTTAAAATGAGGCGCATCAGATCTGACAACCTAAGAAGGAAAAGCTTAGGCGATATCCAGCAGAGCAACGTGTTCACCATCGAACCCCTCACTCCGCCCCCACAGTATGATGATAAGATCCCTCCACTTCCTCCTAACACACAAGAGTGAACCCATGCTGGAGATTTACACTGACATTGAGATGAAGTGTCCACCTCCTTTATGAAATACTACAGCACTGAACTGCATATTACTCCTCTGGATAGGATATGCCACTATCAGCAGCACAGAGTTCACAGTGTTCTGTAAAGGTGGAGCGCCTTCAGAATGTCTTCCTGTGTTGGCTGTACATTTCCTGTTTAGAAAAAAACCCTTA

Function

symbol description
tmem51a Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM51 (transmembrane protein 51).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000052_00836931_00841228.mRNA True 2791 mRNA 0.43 3 835368 841433

Neighbor

gene id symbol gene type direction distance location
CI01000052_00793472_00831585 KAZNA coding upstream 3415 793472 ~ 831953 (+)
CI01000052_00714377_00725358 ZYMND12 coding upstream 109979 714377 ~ 725389 (+)
CI01000052_00702155_00711896 SLC16A1, MCT1A, SLC16A1A, SLC16A1B coding upstream 123472 702155 ~ 711896 (+)
CI01000052_00496215_00499293 NA coding upstream 335644 496215 ~ 499724 (+)
CI01000052_00437783_00438718 NA coding upstream 396619 437278 ~ 438749 (+)
CI01000052_00906265_00916799 SEMA3B coding downstream 63123 904556 ~ 916813 (+)
CI01000052_01044855_01046432 NA coding downstream 203422 1044855 ~ 1046617 (+)
CI01000052_01143235_01145343 NA coding downstream 301723 1143156 ~ 1147150 (+)
CI01000052_01295531_01298937 NA coding downstream 452761 1294194 ~ 1299203 (+)
CI01000052_01368837_01373810 OPN7C coding downstream 527404 1368837 ~ 1374198 (+)
G223376 NA non-coding upstream 59287 775842 ~ 776081 (+)
G223341 NA non-coding upstream 64856 718697 ~ 770512 (+)
G223342 NA non-coding upstream 98603 734821 ~ 736765 (+)
G223355 NA non-coding upstream 150600 684545 ~ 684768 (+)
G223386 NA non-coding downstream 79518 920951 ~ 921183 (+)
G223476 NA non-coding downstream 151381 992814 ~ 993014 (+)
G223480 NA non-coding downstream 158925 1000358 ~ 1000639 (+)
G223450 NA non-coding downstream 177198 1018631 ~ 1019051 (+)
G223482 NA non-coding downstream 178736 1020169 ~ 1020655 (+)
G223545 NA other downstream 429059 1270492 ~ 1270927 (+)
G223694 NA other downstream 1207893 2049326 ~ 2104299 (+)
G224953 NA other downstream 2589703 3431136 ~ 3460136 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location